PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011080757.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family WRKY
Protein Properties Length: 542aa    MW: 59734.6 Da    PI: 8.1441
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011080757.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.33.1e-33208265260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkk+ers  d++++ei+Y+g+Hnh+k
  XP_011080757.1 208 DDGYNWRKYGQKQVKGSENPRSYYKCTHPNCPTKKKIERSL-DGRITEIVYKGTHNHPK 265
                     8****************************************.***************85 PP
2WRKY105.13.8e-33383441159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Cts+gC+v+k+ver+a+d+++v++tYeg+Hnh+
  XP_011080757.1 383 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSQGCQVRKHVERAAHDTRAVITTYEGKHNHD 441
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-28197266IPR003657WRKY domain
PROSITE profilePS5081124.214202266IPR003657WRKY domain
SuperFamilySSF1182902.22E-25202266IPR003657WRKY domain
SMARTSM007744.8E-36207265IPR003657WRKY domain
PfamPF031062.7E-25208264IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-37368443IPR003657WRKY domain
SuperFamilySSF1182901.28E-29375443IPR003657WRKY domain
PROSITE profilePS5081138.721378443IPR003657WRKY domain
SMARTSM007743.7E-39383442IPR003657WRKY domain
PfamPF031062.1E-25384441IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MSSASFTSLL ASDHHPTSAA AVVSKGLGDR IAERTGSGVP KFKSLPPPSL PISPPPAAFS  60
PSSFFAIPHG LSPAELLDSP VLLSASNILP SPTTGTFPIQ GFDWKSKSDR AQQQQEVEIK  120
NQQKGFSDFS FQAQTKPLTS YGQQTWGYQE PVNQDVSSSD KPNQESEFSS THEVSTFQTS  180
HRNNNTVRSE YDHYNQSSQT INDNRRSDDG YNWRKYGQKQ VKGSENPRSY YKCTHPNCPT  240
KKKIERSLDG RITEIVYKGT HNHPKPQSGR RSSSSSSTAS ASSIVIQTCS TQSNEIPEQS  300
YGLNAAGKVD SFVSTPENSS ISIEDLEQSA QKSKSGGDEF DEVEPDAKRW KGENESEGIS  360
AMGNRTVREP RVVVQTMSDI DILDDGYRWR KYGQKVVKGN PNPRSYYKCT SQGCQVRKHV  420
ERAAHDTRAV ITTYEGKHNH DVPAARGSGN SSSLSRTVPY IPSNNATIAA VRPITLQHNL  480
AYPMPVRSSA RPPTVEDDAP YMSESHRHSR FGNSITSCVD NALFSRAKDE PGDDMFLESL  540
LR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36199444878Probable WRKY transcription factor 4
2lex_A1e-36199444878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011080757.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080757.10.0probable WRKY transcription factor 25
SwissprotQ6B6R41e-136WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A0D5YAC00.0A0A0D5YAC0_SALMI; WRKY protein
STRINGEOY346310.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22862460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-100WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]