PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011080777.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

LBD

Protein Properties

Length: 170aa MW: 18675.4 Da PI: 7.7342

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011080777.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	143.1	8.4e-45	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +Ca+Ck+lrr+CakdC++apyfp ++p+kfa+vhk+FGasnv+k+l++lp ++r da++slvyeA+ar+rdPvyG+vg i+ lq+q++ql+ +la XP_011080777.1 7 PCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRGDAVNSLVYEANARMRDPVYGCVGAISYLQNQVSQLQMQLA 101 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_011080777.1 102 VAQAE 106 *9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.899	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.5E-44	7	104	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MGGGSSPCAS CKLLRRRCAK DCIFAPYFPP DDPHKFAIVH KVFGASNVSK MLQELPVHQR 60 GDAVNSLVYE ANARMRDPVY GCVGAISYLQ NQVSQLQMQL AVAQAEILCI QMQQEQSPAA 120 MVGLPPPPQD EKSSLLLATN NFNNLQQCFG FASTSSNVMQ DPLKRESLWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-49	3	108	7	112	LOB family transfactor Ramosa2.1
5ly0_B	4e-49	3	108	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011080777.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011080777.1	1e-125	LOB domain-containing protein 12
Swissprot	Q8LBW3	6e-81	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A2G9I6Q4	1e-100	A0A2G9I6Q4_9LAMI; Uncharacterized protein
STRING	VIT_06s0004g07200.t01	4e-94	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	3e-83	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]