PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011081140.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family WRKY
Protein Properties Length: 187aa    MW: 21297 Da    PI: 8.4766
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011081140.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.35.6e-32108166159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vk+s +prsYYrCt+++C+vkk+++r ++d+++v++tYeg Hnh+
  XP_011081140.1 108 LDDGYKWRKYGQKSVKNSVHPRSYYRCTHHTCNVKKQIQRLSKDTSIVVTTYEGIHNHP 166
                     59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-3295166IPR003657WRKY domain
SuperFamilySSF1182905.89E-28101167IPR003657WRKY domain
PROSITE profilePS5081128.449103168IPR003657WRKY domain
SMARTSM007744.0E-36108167IPR003657WRKY domain
PfamPF031065.0E-25109166IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MEGENYPYFF DASSSFSLNN NTPLDVVDHS MQNPDHHLHD HQFPCSDQID LAGFLGAGSL  60
EQNPVPPLPG GSIGDVENVC RNKGKVGKKK KYVPPRVAFH TRSAEDILDD GYKWRKYGQK  120
SVKNSVHPRS YYRCTHHTCN VKKQIQRLSK DTSIVVTTYE GIHNHPCEKL METLSPLLRQ  180
LQFLSRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-2496165271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011081140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081140.11e-140probable WRKY transcription factor 43
SwissprotQ8VWQ41e-56WRK56_ARATH; Probable WRKY transcription factor 56
TrEMBLA0A0D5Y9A27e-89A0A0D5Y9A2_SALMI; WRKY protein
STRINGMigut.A00716.1.p5e-81(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63742433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64000.18e-58WRKY DNA-binding protein 56