PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011081260.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 272aa    MW: 30645.3 Da    PI: 5.2052
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011081260.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.0001526223
                    EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                    +C+ C+k+Fs+   L  H+r+H
  XP_011081260.1  5 ECKLCSKRFSNGKALGGHMRSH 26
                    7********************9 PP
2zf-C2H217.98.5e-06145167123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC+ C+k+F+++  L +H  +H
  XP_011081260.1 145 YKCERCDKVFKSSQGLGSHRASH 167
                     9******************9998 PP
3zf-C2H215.26e-05198220123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp Cgk F++   L  H r+H
  XP_011081260.1 198 HECPLCGKIFRSAQALGGHKRSH 220
                     79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.011431IPR007087Zinc finger, C2H2
SMARTSM003550.26426IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.17E-10526No hitNo description
PfamPF139126.1E-9528IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-5139168IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.17E-10140167No hitNo description
PfamPF139125.5E-7144167IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.388145167IPR007087Zinc finger, C2H2
SMARTSM003550.023145167IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280147167IPR007087Zinc finger, C2H2
SuperFamilySSF576673.98E-6194222No hitNo description
Gene3DG3DSA:3.30.160.603.5E-4197220IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.8E-10197220IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.596198220IPR007087Zinc finger, C2H2
SMARTSM003550.0051198220IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280200220IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MAGMECKLCS KRFSNGKALG GHMRSHYAAL PLPPKTPQRQ EEEPSDPPTE STSSFFSCDE  60
REGDERERES SAEKSSLSFG LREDPKKRLR LVDPEFFETE SRFKRAKGVD DGEPLMEEDV  120
ALCLVMLSRD VWRISEDSRT SEKVYKCERC DKVFKSSQGL GSHRASHFKK IKSSFDGFSD  180
TDQFFRKPKE IVVKEQVHEC PLCGKIFRSA QALGGHKRSH LLASKFVGTN VSDKLEDDAS  240
IDLNLPAAAA AAIEDEDEDP EEFVSEERCF GF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011081260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020550028.10.0zinc finger protein ZAT1
TrEMBLA0A022QZZ33e-70A0A022QZZ3_ERYGU; Uncharacterized protein
STRINGMigut.A00957.1.p3e-71(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10952480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-29C2H2-like zinc finger protein