PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011081336.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family B3
Protein Properties Length: 428aa    MW: 47110.2 Da    PI: 6.7351
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011081336.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.69.3e-3298202199
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.se 89 
                     f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  +
  XP_011081336.1  98 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGvGEsGK 192
                     89***************************966778999*************************************************66577788 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l++ ++r+
  XP_011081336.1 193 DRLFIDWRRR 202
                     8999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.5E-4292204IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.29E-3095203IPR015300DNA-binding pseudobarrel domain
CDDcd100174.05E-2796192No hitNo description
PfamPF023622.7E-2998202IPR003340B3 DNA binding domain
SMARTSM010198.3E-2398203IPR003340B3 DNA binding domain
PROSITE profilePS5086314.81998203IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MNFMSGRPGF YEDISGTRGT SSSSSSSSSS SFQHKGLPLY AHQRHQEAYG QPPESSPTNN  60
GSAGDEESDF DHMLVRRGAE GMSSTGAAAV VIEREHMFDK VVTPSDVGKL NRLVIPKQHA  120
EKYFPLDSST NEKGLLLNFE DRNGKPWRFR YSYWNSSQSY VMTKGWSRFV KEKKLDAGDI  180
VSFQRGVGES GKDRLFIDWR RRPDAPELPP PIPTLSIPHQ FSFHRSIHPW NPLYLQPPSR  240
DYSHLLQPST ISTTHQYQSH HYHQHHLPTG YAAPYAYNNS VVNGNPCPPG SIMYLRSGPG  300
GGGSGGGAGV LGPQELGLVH AQRGSGVGVE QMVFESVPVV QGKAAAKRLR LFGVTMDCPI  360
SESDECDILS STTLPHSTTM PDQQQLPPFD SSSSSSIPYL QLRPYNHSDD DDDNDKGKGA  420
AMSLDLDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-67932033114B3 domain-containing transcription factor NGA1
5os9_B2e-67932033114B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011081336.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0615967e-88KJ061596.1 Sesamum indicum clone TilSSR_32797 microsatellite Sesame_32797 sequence.
GenBankKJ0637507e-88KJ063750.1 Sesamum indicum clone TilSSR_34951 microsatellite Sesame_34951 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081336.10.0B3 domain-containing transcription factor NGA1 isoform X1
TrEMBLA0A2G9G2U21e-178A0A2G9G2U2_9LAMI; Uncharacterized protein
STRINGPGSC0003DMT4000318631e-120(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28172350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.16e-71B3 family protein