PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011081350.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family Trihelix
Protein Properties Length: 655aa    MW: 71689.8 Da    PI: 7.4763
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011081350.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix100.11.9e-3185169187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW++qe+laL+++r+em++++r++ lk+plWe+vs+k++e g++rs+k+Ckek+en++k+yk++keg+ +r++++s  +++f+qlea
  XP_011081350.1  85 RWPRQETLALLQIRSEMDTAFRDATLKGPLWEQVSRKLAELGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YKFFSQLEA 169
                     8*********************************************************************866665..*******85 PP
2trihelix107.49.7e-34477562187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+k evlaLi++r+++e+r++++  k+plWee+s+ m++ g++r++k+Ckekwen+nk++kk+ke++kkr se+s+tcpyf++l+a
  XP_011081350.1 477 RWPKAEVLALIKLRSSLESRYQEAGPKGPLWEEISSGMQRMGYNRNAKRCKEKWENINKYFKKVKESNKKR-SEDSKTCPYFNELDA 562
                     8*********************************************************************8.89999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.3E-482144IPR001005SANT/Myb domain
PROSITE profilePS500906.74884142IPR017877Myb-like domain
PfamPF138375.3E-2284170No hitNo description
CDDcd122039.52E-2884149No hitNo description
PROSITE profilePS500907.224470534IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.8E-4473533IPR009057Homeodomain-like
SMARTSM007170.0014474536IPR001005SANT/Myb domain
CDDcd122034.02E-31476541No hitNo description
PfamPF138371.4E-23476563No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MQHQQQEGGG GPQSLGGYPQ VQPQSAPPEV VISSDEHQKF GDLGIAEAAS PISSRPPAPG  60
AIANNDFEEV IRATAEGAGG ASGNRWPRQE TLALLQIRSE MDTAFRDATL KGPLWEQVSR  120
KLAELGYKRS AKKCKEKFEN VHKYYKRTKE GRAGRQDGKS YKFFSQLEAL QHSTATAIPT  180
THSPLQVLPR IPNHPTSVSL SLPPAVMPQP EGAHPPPAAG AGTAATRDAP AVSLFNAFGV  240
SSSSNSSSSS EGEDDQDEDE EEDVEMELTG NPHNRKRKRS HRAGSADNDE RMMDFFEGLM  300
KQVMQKQEAM QQKFLEAIEK REQDRMIREE AWKRQDMARL AREHELTAQE RAISASRDAA  360
IIAFLQKITG QTIHLPTAVP RNPPPSVPVS QPPPSGPQQQ PTFPEQQQSL SQTHPKRRDQ  420
QGVSSHHPLQ TQTLEIVEAH DQLQNTSETV AAAIPEQQMP LLDFTGGSSS LEVTSSRWPK  480
AEVLALIKLR SSLESRYQEA GPKGPLWEEI SSGMQRMGYN RNAKRCKEKW ENINKYFKKV  540
KESNKKRSED SKTCPYFNEL DALYRKKVIG NTGGNVTGAG GGGSSGILGS LPEQEKQQQQ  600
QGIGMLSLES LKANVSEDKD GAKTQAQTSS VGAYSSGLFG EQSQGNIGGA KQKTC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127135KRSAKKCKE
2275280KRKRSH
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011081350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081350.10.0trihelix transcription factor GTL1 isoform X2
SwissprotQ391174e-69TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A2G9H8550.0A0A2G9H855_9LAMI; Transcription factor GT-2
STRINGXP_006439158.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.18e-48Trihelix family protein