PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011081404.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

MYB

Protein Properties

Length: 203aa MW: 23364.5 Da PI: 10.1004

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011081404.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	62.3	1e-19	30	77	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT++Ed +l+++v+ +G+++Wk++a + g++R++k+c++rw++yl XP_011081404.1 30 RGAWTADEDAKLAQYVEIHGPKRWKSVAVKSGLNRCGKSCRLRWLNYL 77 89********************************************97 PP
2	Myb_DNA-binding	37.8	4.6e-12	83	129	1	47
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqky 47 rg+ + E++l+++++++ g +W++Iar+++ gRt++++k++w+ + XP_011081404.1 83 RGNISDAEEDLILRLHRLQEIGkRWSLIARRLP-GRTDNEIKNYWNAH 129 678889999999999975544445*******.*********976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	25.758	25	81	IPR017930	Myb domain
SuperFamily	SSF46689	1.46E-26	28	126	IPR009057	Homeodomain-like
SMART	SM00717	1.0E-15	29	79	IPR001005	SANT/Myb domain
Pfam	PF00249	7.1E-18	30	77	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.8E-23	31	84	IPR009057	Homeodomain-like
CDD	cd00167	1.06E-10	32	77	No hit	No description
SMART	SM00717	2.2E-10	82	132	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	15.412	83	134	IPR017930	Myb domain
Pfam	PF00249	2.9E-10	83	130	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.4E-21	85	133	IPR009057	Homeodomain-like
CDD	cd00167	5.25E-8	87	130	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MHKRTRKRRH VGMAKRIGGA NGGKRSDLNR GAWTADEDAK LAQYVEIHGP KRWKSVAVKS 60 GLNRCGKSCR LRWLNYLRPD IMRGNISDAE EDLILRLHRL QEIGKRWSLI ARRLPGRTDN 120 EIKNYWNAHL RKKANLMEKL PATSIAVVGK NWKDNEGMSS VKETEASGDD ENGVRDDEVF 180 DFSTQETYGL EWVKTFLELE EDS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	1e-26	26	134	23	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011081404.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF059390	2e-40	KF059390.1 Salvia miltiorrhiza MYB-related transcription factor (MYB36) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011081404.2	1e-148	transcription factor WER-like
TrEMBL	A0A2G9HQZ3	2e-80	A0A2G9HQZ3_9LAMI; Uncharacterized protein
STRING	XP_010258843.1	7e-75	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G40330.1	1e-48	myb domain protein 23