PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011081575.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

LBD

Protein Properties

Length: 311aa MW: 35076 Da PI: 6.0083

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011081575.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.6	1e-38	48	147	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++ rkCa+dC+lapyfp++++++f n+h+lFG+sn++k++++l++ r++am+++++++eara dPv G++++i++l+qq++ +kael+ XP_011081575.1 48 ACAACKYQLRKCASDCILAPYFPHDRQRQFLNAHRLFGVSNIVKIIRHLDPPARDHAMRTIIFQSEARAADPVGGCYRIIRELEQQISLVKAELE 142 7*********************************************************************************************9 PP DUF260 96 llkee 100 + ++ XP_011081575.1 143 IVLHQ 147 98776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.5	47	148	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.2E-36	48	143	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MQSNNIIIPN NLNKRTNTCT PSRKNNNNNI TSINTIPHHR SHVSTTQACA ACKYQLRKCA 60 SDCILAPYFP HDRQRQFLNA HRLFGVSNIV KIIRHLDPPA RDHAMRTIIF QSEARAADPV 120 GGCYRIIREL EQQISLVKAE LEIVLHQLTL CRAAAARQVE STPLSSISGE LAWSCNEEAK 180 WGGDCGENDD DEVVVINDVN LWNCMHENTN GYAESISSSF AAQDHHRRSL SFDECNHDMK 240 AILDHLSGDD HDGTHEEFKF DSHGNILPSK NAILTEENPT FKEEDEPLSY IQDHHDLKAA 300 ATFFTLTNCD F

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-22	49	142	12	105	LOB family transfactor Ramosa2.1
5ly0_B	2e-22	49	142	12	105	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011081575.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011081575.1	0.0	LOB domain-containing protein 22-like
TrEMBL	A0A2G9HT38	1e-109	A0A2G9HT38_9LAMI; Uncharacterized protein
STRING	Migut.D00966.1.p	1e-105	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9926	21	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	3e-50	LOB domain-containing protein 22