PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011081645.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ERF
Protein Properties Length: 225aa    MW: 24213.7 Da    PI: 4.9528
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011081645.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-184494155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                    + y+GVr ++ +g+Wv+eIr p     r   r++lg++ tae+Aa+a++ a+++++g
  XP_011081645.1 44 PVYRGVRMRS-WGKWVCEIRQP-----RmnSRIWLGTYSTAEMAARAHDSAALSIKG 94
                    68*****998.**********8.....334***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.0E-134494IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-2045103IPR016177DNA-binding domain
SMARTSM003803.1E-3445108IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-3145103IPR001471AP2/ERF domain
PROSITE profilePS5103222.43145102IPR001471AP2/ERF domain
PRINTSPR003671.4E-104657IPR001471AP2/ERF domain
CDDcd000188.56E-2946102No hitNo description
PRINTSPR003671.4E-106884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MAEPPCSAAE SSSSTTSAVS APNSDENTDK KCRKRGSHHG NKHPVYRGVR MRSWGKWVCE  60
IRQPRMNSRI WLGTYSTAEM AARAHDSAAL SIKGNSAVLN FPQLRNSLPR PASLSPRDVQ  120
AAAAKAAVME ELSPSCSSST SGSSMCDQEN GGSEELGEII ELPSLEGNYD SWGSEYSVVD  180
TAEEGWLNPA WCAADKEIGE YIYDQVGGGT GSLNPSSFET LRWAC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-1940106976Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011081645.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081645.11e-166ethylene-responsive transcription factor TINY-like
SwissprotQ9LYD32e-54DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A2G9HTV68e-79A0A2G9HTV6_9LAMI; Uncharacterized protein
STRINGSolyc06g066540.1.13e-62(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.18e-44ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]