PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011081679.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

C2H2

Protein Properties

Length: 507aa MW: 55659.5 Da PI: 9.0827

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011081679.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	80	102	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_011081679.1 80 FVCEICNKGFQRDQNLQLHRRGH 102 89*******************88 PP
2	zf-C2H2	12.5	0.00045	157	179	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + XP_011081679.1 157 WKCEKCSKRYAVQSDWKAHSKIC 179 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.7E-5	79	102	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.54E-7	79	102	No hit	No description
SMART	SM00355	0.017	80	102	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	80	102	IPR007087	Zinc finger, C2H2
Pfam	PF12171	8.1E-5	80	102	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	82	102	IPR007087	Zinc finger, C2H2
SMART	SM00355	87	122	152	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	7.3E-5	145	178	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.54E-7	152	177	No hit	No description
SMART	SM00355	130	157	177	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence Send to blast
MSNLTSAISN EASISSINNR NEMGTSTNMY PHQQHLQSFA SPNNPTQPAP KKKRNLPGNP 60 DPEAEVVALS PRTLMATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RNNKEVVRKK 120 VYVCPEPSCV HHDPSRALGD LTGIKKHFSR KHGEKKWKCE KCSKRYAVQS DWKAHSKICG 180 TREYRCDCGT LFSRRDSFIT HRAFCDALAE ESSRSMTQNP LLMSTQTVPN NQAHQIHGFH 240 HPLVPLKQEN PQNFNQLPPW LSSEQPGAGG PGPPINPLFS SSPRLQHPVQ ENPNPNSISI 300 STTTLSSSSS SLMSATALLQ KAAQMGVAMS TKMPSQSSDD QSILIRPHHH VGAPGFCATS 360 STTTAGLPSR EEMGTAAFVH GLASFGNKIV NLPGGCMDLQ DMNMVASSLP CSTTGGGFDG 420 STLGFEYSLN GILNPKSNIH SFQENAHLMS TVRKDGSGGG DGLTRDFLGL RAFPHHRDFL 480 NMAGLDQMGS SSYDHHDQPQ NRAPWQT

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence Send to blast

MSNLTSAISN EASISSINNR NEMGTSTNMY PHQQHLQSFA SPNNPTQPAP KKKRNLPGNP  60
DPEAEVVALS PRTLMATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RNNKEVVRKK  120
VYVCPEPSCV HHDPSRALGD LTGIKKHFSR KHGEKKWKCE KCSKRYAVQS DWKAHSKICG  180
TREYRCDCGT LFSRRDSFIT HRAFCDALAE ESSRSMTQNP LLMSTQTVPN NQAHQIHGFH  240
HPLVPLKQEN PQNFNQLPPW LSSEQPGAGG PGPPINPLFS SSPRLQHPVQ ENPNPNSISI  300
STTTLSSSSS SLMSATALLQ KAAQMGVAMS TKMPSQSSDD QSILIRPHHH VGAPGFCATS  360
STTTAGLPSR EEMGTAAFVH GLASFGNKIV NLPGGCMDLQ DMNMVASSLP CSTTGGGFDG  420
STLGFEYSLN GILNPKSNIH SFQENAHLMS TVRKDGSGGG DGLTRDFLGL RAFPHHRDFL  480
NMAGLDQMGS SSYDHHDQPQ NRAPWQT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-34	153	219	3	71	Zinc finger protein JACKDAW
5b3h_F	1e-34	153	219	3	71	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	106	119	KLKQRNNKEVVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00206	DAP	Transfer from AT1G55110	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011081679.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ028874	3e-56	KJ028874.1 Sesamum indicum clone TilSSR_75 microsatellite sesame_75 sequence.
GenBank	KJ035093	3e-56	KJ035093.1 Sesamum indicum clone TilSSR_6294 microsatellite sesame_6294 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011081677.1	0.0	protein indeterminate-domain 7 isoform X1
Refseq	XP_011081679.1	0.0	protein indeterminate-domain 7 isoform X2
Swissprot	Q8H1F5	1e-126	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A2G9GNP5	0.0	A0A2G9GNP5_9LAMI; Ovo transcription factor
STRING	Migut.A00127.1.p	0.0	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-117	indeterminate(ID)-domain 7

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]