PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011081787.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ERF
Protein Properties Length: 244aa    MW: 26370 Da    PI: 4.9648
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011081787.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.41.3e-1163107155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     + y+GVr +  +g+Wv+eIr+p     r k+       t+e+Aa+a++ a+++++g
  XP_011081787.1  63 PVYRGVRMRN-WGKWVSEIREP-----RkKS-----XPTPEMAARAHDVAALSIKG 107
                     68*****998.**********9.....3244.....56**************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.9E-563107IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-1364116IPR016177DNA-binding domain
SMARTSM003802.5E-2264121IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-2064116IPR001471AP2/ERF domain
PROSITE profilePS5103216.04164115IPR001471AP2/ERF domain
PRINTSPR003676.7E-126576IPR001471AP2/ERF domain
CDDcd000182.02E-2365117No hitNo description
PRINTSPR003676.7E-1297117IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MTTENHISDG SDSFFSLSSP CSLSQTQSSP PDTSAVKAEE SPETAKKIKR IRQANNNSSS  60
KHPVYRGVRM RNWGKWVSEI REPRKKSXPT PEMAARAHDV AALSIKGASA ILNFPELAAA  120
LPRPVSLSPR DVQAAAAKAA AMEKFDHLLS SPSSTSSSSS RLSSSSSLSS LVSAMDLSTT  180
SEELSEIVEL PSLGSCFDSL ELRNDFVYIE NTVLEGWLDQ PPPWGDGGDD GGVPSTFETL  240
WWNY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011081787.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081787.11e-176LOW QUALITY PROTEIN: ethylene-responsive transcription factor TINY-like
SwissprotQ9LYD34e-58DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A2G9GZ615e-95A0A2G9GZ61_9LAMI; Uncharacterized protein
STRINGMigut.A00206.1.p3e-69(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.13e-51ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]