PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011081947.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MIKC_MADS
Protein Properties Length: 212aa    MW: 24845.4 Da    PI: 6.9638
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011081947.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.55.4e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien+snrqvt+skRrngi+KKA+E+SvLCda+v+viif+s+gk++e++s
  XP_011081947.1  9 KRIENSSNRQVTYSKRRNGIMKKAKEISVLCDAQVSVIIFASSGKMHEFCS 59
                    79***********************************************96 PP
2K-box78.81.4e-2671166196
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                     y+k sgk+l++ak+e+l++e++++kke++++q e+Rhl+Ged+++L++keL+ Le++Le+++++ ++k++e+++++ ++  + e+e+q+ + +Lr
  XP_011081947.1  71 YHKLSGKRLWDAKHEHLDNEINRIKKENDSMQIELRHLKGEDISTLNYKELMVLEEALENGVSTLKAKQMEFVRMMRKHNEMIEEENQNLQFKLR 165
                     7899***********************************************************************************99999999 PP

           K-box  96 k 96 
                     +
  XP_011081947.1 166 Q 166
                     7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.562161IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-41160IPR002100Transcription factor, MADS-box
CDDcd002654.60E-43280No hitNo description
SuperFamilySSF554556.54E-37296IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-29323IPR002100Transcription factor, MADS-box
PfamPF003193.2E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-293859IPR002100Transcription factor, MADS-box
PfamPF014863.4E-1683164IPR002487Transcription factor, K-box
PROSITE profilePS5129713.35384170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MGRGKIEIKR IENSSNRQVT YSKRRNGIMK KAKEISVLCD AQVSVIIFAS SGKMHEFCSP  60
STTLVDMLDQ YHKLSGKRLW DAKHEHLDNE INRIKKENDS MQIELRHLKG EDISTLNYKE  120
LMVLEEALEN GVSTLKAKQM EFVRMMRKHN EMIEEENQNL QFKLRQLHLD PMDDNVMESQ  180
GVYDHQGVAD YEAQMPFAFR VQPMQPNLQE RF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A9e-17160160MEF2 CHIMERA
6byy_B9e-17160160MEF2 CHIMERA
6byy_C9e-17160160MEF2 CHIMERA
6byy_D9e-17160160MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development. Acts in conjunction with DEFICIENS (defA).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011081947.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM1120220.0KM112022.1 Catalpa bungei MIKC-type MADS-box transcriptional regulator pistillata (PI) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081947.11e-158floral homeotic protein GLOBOSA
SwissprotQ033781e-147GLOB_ANTMA; Floral homeotic protein GLOBOSA
TrEMBLQ2PF141e-154Q2PF14_VERHY; GLOBOSA homologue
STRINGMigut.A00326.1.p1e-150(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46802139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.13e-83MIKC_MADS family protein
Publications ? help Back to Top
  1. Tröbner W, et al.
    GLOBOSA: a homeotic gene which interacts with DEFICIENS in the control of Antirrhinum floral organogenesis.
    EMBO J., 1992. 11(13): p. 4693-704
    [PMID:1361166]
  2. Gallois JL, et al.
    Functional characterization of the plant ubiquitin regulatory X (UBX) domain-containing protein AtPUX7 in Arabidopsis thaliana.
    Gene, 2013. 526(2): p. 299-308
    [PMID:23747397]
  3. Davies B,Egea-Cortines M,de Andrade Silva E,Saedler H,Sommer H
    Multiple interactions amongst floral homeotic MADS box proteins.
    EMBO J., 1996. 15(16): p. 4330-43
    [PMID:8861961]