PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011082111.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

NAC

Protein Properties

Length: 339aa MW: 37747.6 Da PI: 8.9563

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011082111.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.4	9.5e-56	12	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL +k+++ +++ ++i +vd++k+ePwdLp k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke++++ XP_011082111.1 12 LPPGFRFHPTDEELITYYLINKISDANFTG-RAIGDVDLNKCEPWDLPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIYNS 105 79***********************999.89***********99999************************************98 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++elvg+kktLvfy+grap+gekt+Wvmheyr+ XP_011082111.1 106 nTSELVGMKKTLVFYRGRAPRGEKTNWVMHEYRI 139 67788*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.01E-64	9	161	IPR003441	NAC domain
PROSITE profile	PS51005	61.349	12	161	IPR003441	NAC domain
Pfam	PF02365	9.4E-29	13	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MEGSGEVKEE KLPPGFRFHP TDEELITYYL INKISDANFT GRAIGDVDLN KCEPWDLPGK 60 AKMGEKEWYF FSLRDRKYPT GVRTNRATNT GYWKTTGKDK EIYNSNTSEL VGMKKTLVFY 120 RGRAPRGEKT NWVMHEYRIH SKSAYRTTKQ DEWVVCRVFQ KSAGGKKYPS NHPRAVNPFT 180 YNVEMPQNPM QPQMMQPDNF QFPARNYVTP AEIQEFNKVF RGVGSTSMIN FPVPPQVNYS 240 PVGAGGAGGS CFTISGLNLN LGGGAIPAQP FMRPAPPPPA PGMNQQDVTS AMLSAGAAIA 300 SDHQAAAGYG GDMNNANTMS NRFIGMEQCA DLDNYWPSY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-56	12	167	17	171	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-56	12	167	17	171	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-56	12	167	17	171	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-56	12	167	17	171	NO APICAL MERISTEM PROTEIN
3swm_A	5e-56	12	167	20	174	NAC domain-containing protein 19
3swm_B	5e-56	12	167	20	174	NAC domain-containing protein 19
3swm_C	5e-56	12	167	20	174	NAC domain-containing protein 19
3swm_D	5e-56	12	167	20	174	NAC domain-containing protein 19
3swp_A	5e-56	12	167	20	174	NAC domain-containing protein 19
3swp_B	5e-56	12	167	20	174	NAC domain-containing protein 19
3swp_C	5e-56	12	167	20	174	NAC domain-containing protein 19
3swp_D	5e-56	12	167	20	174	NAC domain-containing protein 19
4dul_A	4e-56	12	167	17	171	NAC domain-containing protein 19
4dul_B	4e-56	12	167	17	171	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00277	DAP	Transfer from AT2G24430	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011082111.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011082111.1	0.0	NAC domain-containing protein 92
Refseq	XP_020550032.1	0.0	NAC domain-containing protein 92
TrEMBL	A0A2G9HCT9	0.0	A0A2G9HCT9_9LAMI; Uncharacterized protein
STRING	cassava4.1_011442m	1e-168	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	1e-112	NAC domain containing protein 38