PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011082170.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ERF
Protein Properties Length: 178aa    MW: 20127.6 Da    PI: 8.8233
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011082170.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.8e-19756255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                    +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aaka+++a++ + g
  XP_011082170.1  7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAAKAYDEAARIMCG 56
                    69******9.**********8.....334**********************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.23E-33666No hitNo description
Gene3DG3DSA:3.30.730.103.5E-33764IPR001471AP2/ERF domain
PfamPF008473.4E-11755IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-20766IPR016177DNA-binding domain
PROSITE profilePS5103220.415764IPR001471AP2/ERF domain
SMARTSM003802.6E-38770IPR001471AP2/ERF domain
PRINTSPR003674.8E-11819IPR001471AP2/ERF domain
PRINTSPR003674.8E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MGRPQQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAAKAYDEA ARIMCGPRAR  60
TNFSYSPNEP QLSSGRLLSA TLMAKLHKCH MTSLALAKKP ALNKVNEAVQ TSRFDRVNGT  120
DNKDEEKGSG SYGSPTSSDN NVHKFRSLED DHIEQMIQEL LDYGTVEVCS VMENSKNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-16868667ATERF1
3gcc_A3e-16868667ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00526DAPTransfer from AT5G25190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011082170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082170.11e-134ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW53e-69ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A2Z7B6F71e-88A0A2Z7B6F7_9LAMI; Uncharacterized protein
STRINGXP_010063547.19e-79(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13622476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.11e-61ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]