PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011082208.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 270aa    MW: 29239.1 Da    PI: 8.108
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011082208.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012101123123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C++ F ++  L  H++ H
  XP_011082208.1 101 FSCNYCNRKFYSSQALGGHQNAH 123
                     89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.9E-798129No hitNo description
PROSITE profilePS5015711.718101128IPR007087Zinc finger, C2H2
PROSITE patternPS000280103123IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MEAPTTDDHP CNHSHPASST INHSSASCII NSTSSNTPRT DHQMEEEQHP KIKNPDHLAL  60
DLTLLPNNDS DHTSSNQELN LFHTNPSQNP GNEPLSEARV FSCNYCNRKF YSSQALGGHQ  120
NAHKRERTMA KRGGGAASFS RHDAAAHFYP SMASLPLHGS SFNRSLGIQV HSMIHKPSFS  180
ASSVGRVPIY GHSGWARKPL DQQPAIGRLT AENHQIGASS SGGAARFDGG RRLPPAVDGV  240
GGFGWDSTGN SHLKSSNQEE LKKLDLSLRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011082208.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082208.10.0zinc finger protein 1
TrEMBLA0A2G9GFZ18e-84A0A2G9GFZ1_9LAMI; Uncharacterized protein
STRINGXP_002527314.11e-70(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58272233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.13e-46C2H2 family protein