PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011082226.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

LBD

Protein Properties

Length: 439aa MW: 49103.3 Da PI: 7.8041

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011082226.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	117.2	1e-36	40	138	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rr+Ca+dC+lap fpa++ k+f n+hklFG+ n+lk+lk++p++er+++m+s+++eA++rardPv G++++i++++++l ++el+ XP_011082226.1 40 ACAACKYQRRRCAPDCPLAPFFPADRVKEFLNAHKLFGVGNILKILKRVPQHERHNTMRSVIFEANVRARDPVGGCHRLIRDMEERLLLCSSELD 134 7************************************************************************************9999988888 PP DUF260 96 llke 99 + + XP_011082226.1 135 FVMK 138 7665 PP
2	DUF260	62.3	1.2e-19	277	371	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aC +Ck+ +r C C++a f+ +++++ n+h+lF+ +lk+lk++p+++r++a++sl++eA++ra dPv G+ ++i+++ ++l+ +el+ XP_011082226.1 277 ACLVCKLPKRIC---CPMAFRFCVDRKHEVLNAHRLFRGGYILKTLKTVPHHQRQNAIRSLIFEANMRAVDPVGGCQSLIRTMGKRLHFCCSELE 368 69******99...99***************************************************************9999998888887 PP DUF260 96 llk 98 l+ XP_011082226.1 369 LVL 371 765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.028	39	140	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.6E-35	40	135	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	13.678	276	374	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-16	277	367	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
MNSPNNSPTA STKLPDLAQP PLTTPQLSNC DGPCASVGQA CAACKYQRRR CAPDCPLAPF 60 FPADRVKEFL NAHKLFGVGN ILKILKRVPQ HERHNTMRSV IFEANVRARD PVGGCHRLIR 120 DMEERLLLCS SELDFVMKKL AFYKYNLLLN DETPNSNIYD FVQNTKSERA IGVGSLLFAG 180 CSHEELIKVE MVEQFLNDKP TRLSNETEDP KPDVSVETHE SKESKESWSG FCHNYIKKAP 240 PSMILPNNSH DSDTTKLPNT DLSFTTPQVS DGAPDDACLV CKLPKRICCP MAFRFCVDRK 300 HEVLNAHRLF RGGYILKTLK TVPHHQRQNA IRSLIFEANM RAVDPVGGCQ SLIRTMGKRL 360 HFCCSELELV LEKLAFCKSQ VLQNDETPNS NTCDSIQIQN TICKQPVDVG SVLLHEGSSS 420 QVLHLAKTGF RDDVLPQPS

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

MNSPNNSPTA STKLPDLAQP PLTTPQLSNC DGPCASVGQA CAACKYQRRR CAPDCPLAPF  60
FPADRVKEFL NAHKLFGVGN ILKILKRVPQ HERHNTMRSV IFEANVRARD PVGGCHRLIR  120
DMEERLLLCS SELDFVMKKL AFYKYNLLLN DETPNSNIYD FVQNTKSERA IGVGSLLFAG  180
CSHEELIKVE MVEQFLNDKP TRLSNETEDP KPDVSVETHE SKESKESWSG FCHNYIKKAP  240
PSMILPNNSH DSDTTKLPNT DLSFTTPQVS DGAPDDACLV CKLPKRICCP MAFRFCVDRK  300
HEVLNAHRLF RGGYILKTLK TVPHHQRQNA IRSLIFEANM RAVDPVGGCQ SLIRTMGKRL  360
HFCCSELELV LEKLAFCKSQ VLQNDETPNS NTCDSIQIQN TICKQPVDVG SVLLHEGSSS  420
QVLHLAKTGF RDDVLPQPS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-22	36	143	7	114	LOB family transfactor Ramosa2.1
5ly0_B	1e-22	36	143	7	114	LOB family transfactor Ramosa2.1

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011082226.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020550795.1	1e-168	LOB domain-containing protein 22-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9926	21	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	2e-35	LOB domain-containing protein 22