PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011082359.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 291aa    MW: 32316.6 Da    PI: 9.2179
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011082359.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.26.9e-1474125155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr+l+P +   + ++ + a+i+  A+e++k+L+
  XP_011082359.1  74 QRMTHIAVERNRRRQMNEHLAMLRSLMPDS---YVQRGDQASIVGGAIEFVKELE 125
                     79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.58E-1672137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-1372127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.66E-1272129No hitNo description
PROSITE profilePS5088815.06673124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-1174125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-1079130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MGSDALSSHE RLNFIINESK ASSTTYRSKN NYDTGSCSSA VPPPETTNSL EVQGRKKRRK  60
RPKACKNKEE AETQRMTHIA VERNRRRQMN EHLAMLRSLM PDSYVQRGDQ ASIVGGAIEF  120
VKELEHILQS LEANKASSQL LLENKHTHLK CTTTSRDHDD AKQPFPPNTP ELCSCSRHNP  180
LSSKYTSHRK AAAVADVQVT LVEAHASIRI VSGRRVRQLS KLVAAFHSLF LNVLHLNLTT  240
SQSFILYSIS AKVEEGSPLS SAEDISAALH HMLRILIEEE EASATVAATL P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15460RKKRRKR
25559KKRRK
37485RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011082359.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082359.10.0transcription factor bHLH71-like
SwissprotQ9C7T47e-62BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2G9GIK01e-100A0A2G9GIK0_9LAMI; Uncharacterized protein
STRINGSolyc08g076820.2.14e-86(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.17e-61bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]