PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011082367.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 203aa    MW: 22406 Da    PI: 6.5054
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011082367.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.4e-056789123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C k F++   L  H+++H
  XP_011082367.1 67 YTCTFCRKEFRSAQALGGHMNVH 89
                    9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.19E-76493No hitNo description
Gene3DG3DSA:3.30.160.601.1E-46593IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.3236794IPR007087Zinc finger, C2H2
PfamPF139126.3E-66791IPR007087Zinc finger, C2H2
SMARTSM003550.00386789IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MAAAGRPLEL ISLTTHHTTS AHQTARIMWN NKQQISDDHD DDSWEVRAFE EDTAGSLTGI  60
TWPPRSYTCT FCRKEFRSAQ ALGGHMNVHR QDRARLRGAP PLAPNKATTS SVLIPTQQLG  120
LCLLYSLPNP NGVLIPAPTN VAMDFPLIET DSALSSHCQS SNTEPSASTS NDNNYHIRGR  180
NIEMGVKDST IEELDLELRL GRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-136289229superman protein
2l1o_A1e-136289229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011082367.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082367.11e-151transcriptional regulator SUPERMAN-like
TrEMBLA0A068UXM03e-59A0A068UXM0_COFCA; Uncharacterized protein
STRINGEOY240174e-52(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59532133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.12e-35C2H2 family protein