PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011082513.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family NF-YC
Protein Properties Length: 141aa    MW: 15363.4 Da    PI: 10.2822
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011082513.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC26.11.8e-08301071996
           NF-YC  19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 
                      ++P+ ri + lk+ +   +isa aPv ls   e++  el   s   a+++k++ +   di+ av + d    l+++v
  XP_011082513.1  30 LQFPVGRIARFLKVGNYSDRISAGAPVYLSAVLEYLAAELLELSGDSAKDSKKNRIVPRDIELAVRNDDELSRLLERV 107
                     589***************************************************************999888887766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF001257.8E-15795IPR007125Histone H2A/H2B/H3
SMARTSM004146.2E-629129IPR002119Histone H2A
Gene3DG3DSA:1.10.20.101.8E-4913127IPR009072Histone-fold
SuperFamilySSF471131.45E-3713126IPR009072Histone-fold
CDDcd000741.93E-5414125No hitNo description
PRINTSPR006203.2E-402042IPR002119Histone H2A
PROSITE patternPS0004602834IPR032458Histone H2A conserved site
PRINTSPR006203.2E-404964IPR002119Histone H2A
PRINTSPR006203.2E-406477IPR002119Histone H2A
PRINTSPR006203.2E-4092104IPR002119Histone H2A
PfamPF162114.0E-998129IPR032454Histone H2A, C-terminal domain
PRINTSPR006203.2E-40106124IPR002119Histone H2A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MRTTATASTK GSRGKSKASK YVSRSSKAGL QFPVGRIARF LKVGNYSDRI SAGAPVYLSA  60
VLEYLAAELL ELSGDSAKDS KKNRIVPRDI ELAVRNDDEL SRLLERVTIP YAGVTPHIHH  120
FLYPKSNEGR DGEIGSGSQQ L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5oy7_e3e-4881282122Histone H2A
5x0x_C3e-4881282122Histone H2A
5x0x_G3e-4881282122Histone H2A
6ftx_C3e-4881282122Histone H2A type 1
6ftx_G3e-4881282122Histone H2A type 1
6g0l_G3e-4881282122Histone H2A type 1
6i84_Q3e-4881282122Histone H2A type 1
6i84_V3e-4881282122Histone H2A type 1
6j99_C3e-4881282122Histone H2A
6j99_G3e-4881282122Histone H2A
6n1z_B3e-4881282122Histone H2A
6n1z_E3e-4881282122Histone H2A
6ne3_C3e-4881282122Histone H2A type 1
6ne3_G3e-4881282122Histone H2A type 1
6o96_C3e-4881282122Histone H2A
6o96_G3e-4881282122Histone H2A
6om3_C3e-4881282122Histone H2A
6om3_G3e-4881282122Histone H2A
6om3_O3e-4881282122Histone H2A
6om3_S3e-4881282122Histone H2A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtVariant histone H2A which replaces conventional H2A in a subset of nucleosomes. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. Required for checkpoint-mediated arrest of cell cycle progression in response to low doses of ionizing radiation and for efficient repair of DNA double strand breaks (DSBs) specifically when modified by C-terminal phosphorylation (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011082513.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082513.11e-98histone H2AX-like
SwissprotO657592e-63H2AX_CICAR; Histone H2AX
TrEMBLA0A2Z7DAP64e-65A0A2Z7DAP6_9LAMI; Histone H2A
STRINGXP_004494649.12e-62(Cicer arietinum)
STRINGAES820993e-62(Medicago truncatula)