PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011082628.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family AP2
Protein Properties Length: 331aa    MW: 37439.3 Da    PI: 9.0439
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011082628.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.21.7e-1246103156
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkklege 56 
                     s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ +e Aa a++ a++k++g+
  XP_011082628.1  46 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDEEEAAAHAYDLAALKYWGH 103
                     57*******************99998898888888********************997 PP
2AP251.42.7e-16145196155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  XP_011082628.1 145 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 196
                     89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-946103IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-1546112IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.0E-1347111IPR001471AP2/ERF domain
SMARTSM003801.8E-2047116IPR001471AP2/ERF domain
PROSITE profilePS5103218.67647110IPR001471AP2/ERF domain
PRINTSPR003673.6E-64859IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18145206IPR016177DNA-binding domain
CDDcd000181.67E-22145206No hitNo description
PfamPF008475.0E-12145196IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-17146205IPR001471AP2/ERF domain
SMARTSM003801.2E-24146210IPR001471AP2/ERF domain
PROSITE profilePS5103218.334146204IPR001471AP2/ERF domain
PRINTSPR003673.6E-6186206IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MAKSSKRKNS TAAATTTSHN NNDNCTTKTK RRRKSVPRES PQQRSSIYRG VTRHRWTGRY  60
EAHLWDKNCW NESQNKKGRQ GAYDEEEAAA HAYDLAALKY WGHDTILNFP LSTYQNELKE  120
MEGQSKEEYI SALRRKSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVFGNK YLYLGTYATQ  180
EEAATAYDMA AIEYRGLNAV TNFDLSRYIK WLKPDHPNPG ADGIKSNDDE THTKTSETTT  240
AAVLPRPATT SSSSALGLLL QSSKFKEMLE LQTAAGYGSP SEPDPPRRSF PDDIQTSFDF  300
QDLSSFAEEH DVMFGNYEPL APPMFHYGLD A
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011082628.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082628.10.0AP2-like ethylene-responsive transcription factor At1g16060 isoform X2
SwissprotQ94AN41e-110AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A2C9UNY01e-159A0A2C9UNY0_MANES; Uncharacterized protein
STRINGcassava4.1_025233m1e-159(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.12e-96ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]