PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011082631.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family NF-YB
Protein Properties Length: 193aa    MW: 21627.1 Da    PI: 6.7195
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011082631.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB169.44.2e-5348143297
           NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                     +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wal++lGf++y+++lk yl+kyre+ege
  XP_011082631.1  48 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALGSLGFDEYAQSLKRYLSKYREAEGE 142
                     89*******************************************************************************************99 PP

           NF-YB  97 k 97 
                     +
  XP_011082631.1 143 R 143
                     7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.1E-5144151IPR009072Histone-fold
SuperFamilySSF471133.42E-3950150IPR009072Histone-fold
PfamPF008089.0E-2853117IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.5E-198199No hitNo description
PROSITE patternPS00685084100IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006153.5E-19100118No hitNo description
PRINTSPR006153.5E-19119137No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MFNNIGPKVS DIHGAGFTYS YAAPSSRTGG DQEDYHDHDH DHQGGLIKEQ DRLLPIANVG  60
RIMKQILPPN AKISKEAKET MQECVSEFIS FVTGEASDKC HKEKRKTVNG DDICWALGSL  120
GFDEYAQSLK RYLSKYREAE GERVNQNRAH YSGHEEIRID DSSNGRAAPV ALRVQGVSPP  180
PFSYNNLMEK RTI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B1e-4547138192Transcription factor HapC (Eurofung)
4g92_B1e-4547138192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011082631.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082631.11e-145nuclear transcription factor Y subunit B-5-like
SwissprotO822482e-58NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A498K5M24e-67A0A498K5M2_MALDO; Uncharacterized protein
STRINGXP_008368975.17e-68(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.17e-60nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]