PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011082793.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family DBB
Protein Properties Length: 251aa    MW: 26846.8 Da    PI: 4.9179
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011082793.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.96.5e-06446541
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                     C+ ++  e++l C  ++  lC+dC +  H        H++v+
  XP_011082793.1  4 QCNVCGVAEANLLCCADEAALCRDCDQIVHAAnklagkHQRVQ 46
                    7******99******************99*6678888898876 PP
2zf-B_box30.29.2e-105294137
        zf-B_box  1 seerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                    s+++kC+ ++e    +fC +++ llC++C +++H        H
  XP_011082793.1 52 SQKPKCDICQETTGYFFCLEDRALLCRKCDFSIHTAntlvsrH 94
                    5899*******99*********************654555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.741147IPR000315B-box-type zinc finger
CDDcd000211.52E-6347No hitNo description
SMARTSM003362.4E-8447IPR000315B-box-type zinc finger
SMARTSM003364.5E-165299IPR000315B-box-type zinc finger
PROSITE profilePS501199.3855299IPR000315B-box-type zinc finger
PfamPF006434.3E-75395IPR000315B-box-type zinc finger
CDDcd000211.25E-95599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MKIQCNVCGV AEANLLCCAD EAALCRDCDQ IVHAANKLAG KHQRVQLSNS SSQKPKCDIC  60
QETTGYFFCL EDRALLCRKC DFSIHTANTL VSRHQRFLLT GVKVGLEATE PGSSSSSGRT  120
HSHSNEKISG AETRPPTEGT TPISSSGQHS KHLPVQASMV GGISSADLPF TGGSAAGSTS  180
QWLLDEFLGF GDYNKNYNFM DNSSSMGDAD NSPILQATDQ EFEGDECIAQ APDTFWAVPE  240
ILSPPTASGL Y
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011082793.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020550623.11e-176B-box zinc finger protein 22-like isoform X2
SwissprotQ9SYM21e-70BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A2G9G1811e-128A0A2G9G181_9LAMI; Uncharacterized protein
STRINGXP_009625544.11e-110(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28922346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.12e-69light-regulated zinc finger protein 1