PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011082936.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MIKC_MADS
Protein Properties Length: 250aa    MW: 28822.6 Da    PI: 9.909
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011082936.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.21.6e-312574150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  XP_011082936.1 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 74
                    79***********************************************8 PP
2K-box101.51.1e-33931894100
           K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     ++++s++ea+++ +qqe++kL+++i+++q+++R++lGe+++s++lk+L+++e ++ek++++iRskKnell+++ie +qk+e el+++n+ Lr+k+
  XP_011082936.1  93 TNSVSTSEANTQFYQQEANKLRRQIREIQTSNRQILGEGVGSMTLKDLKSMEGKIEKAISRIRSKKNELLFAEIELMQKRELELHNANMFLRAKI 187
                     4455699***************************************************************************************9 PP

           K-box  99 ee 100
                     +e
  XP_011082936.1 188 AE 189
                     86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.2631777IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-401776IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.33E-331894IPR002100Transcription factor, MADS-box
CDDcd002654.30E-451892No hitNo description
PRINTSPR004044.7E-331939IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001973IPR002100Transcription factor, MADS-box
PfamPF003199.4E-272673IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-333954IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-335475IPR002100Transcription factor, MADS-box
PfamPF014869.4E-26100187IPR002487Transcription factor, K-box
PROSITE profilePS5129714.446103193IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MAFPNQESES SNSLRKNGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA  60
LIVFSSRGRL YEYANNSVRA SIERYKKASA DSTNSVSTSE ANTQFYQQEA NKLRRQIREI  120
QTSNRQILGE GVGSMTLKDL KSMEGKIEKA ISRIRSKKNE LLFAEIELMQ KRELELHNAN  180
MFLRAKIAEN ERAQQQMNLM PAGSSDDHHQ YQPMTSSHEA AYDLRNFLPM NLMEPNHHYP  240
RHDQTPLQLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-201889273Myocyte-specific enhancer factor 2B
1tqe_Q3e-201889273Myocyte-specific enhancer factor 2B
1tqe_R3e-201889273Myocyte-specific enhancer factor 2B
1tqe_S3e-201889273Myocyte-specific enhancer factor 2B
6c9l_A3e-201889273Myocyte-specific enhancer factor 2B
6c9l_B3e-201889273Myocyte-specific enhancer factor 2B
6c9l_C3e-201889273Myocyte-specific enhancer factor 2B
6c9l_D3e-201889273Myocyte-specific enhancer factor 2B
6c9l_E3e-201889273Myocyte-specific enhancer factor 2B
6c9l_F3e-201889273Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011082936.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082936.10.0floral homeotic protein AGAMOUS
SwissprotQ93XH41e-124MADS1_VITVI; Agamous-like MADS-box protein MADS1
TrEMBLA0A2G9HUZ91e-159A0A2G9HUZ9_9LAMI; MADS box transcription factor
STRINGXP_009762632.11e-135(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-113MIKC_MADS family protein
Publications ? help Back to Top
  1. Boss PK,Vivier M,Matsumoto S,Dry IB,Thomas MR
    A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development.
    Plant Mol. Biol., 2001. 45(5): p. 541-53
    [PMID:11414613]
  2. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  3. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]