PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011082950.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family DBB
Protein Properties Length: 145aa    MW: 15893.5 Da    PI: 7.6009
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011082950.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.64.5e-07447542
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                     C+ +e  e++  C  ++  lC  C l+ H g      H++ pl
  XP_011082950.1  4 QCDVCEAAEAEVVCCADEAALCGGCDLKVHAGnklatkHQRLPL 47
                    7******99*********************88899999998775 PP
2zf-B_box29.91.2e-095194239
        zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                     ++kC+ ++e    +fC +++  lC++C  ++Hkg      H++
  XP_011082950.1 51 AMPKCDVCQEALGWFFCLEDRAVLCRKCDIATHKGscsqfsHQR 94
                    689********999*******************99999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.897147IPR000315B-box-type zinc finger
CDDcd000216.50E-5347No hitNo description
PfamPF006433.9E-5447IPR000315B-box-type zinc finger
SMARTSM003364.0E-7447IPR000315B-box-type zinc finger
SuperFamilySSF578896.28E-54089No hitNo description
PROSITE profilePS501199.0015097IPR000315B-box-type zinc finger
SMARTSM003362.2E-65097IPR000315B-box-type zinc finger
PfamPF006431.9E-65294IPR000315B-box-type zinc finger
CDDcd000219.45E-65397No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MKIQCDVCEA AEAEVVCCAD EAALCGGCDL KVHAGNKLAT KHQRLPLYPS AMPKCDVCQE  60
ALGWFFCLED RAVLCRKCDI ATHKGSCSQF SHQRLLLTGI RVGLGAKVTP LHMVDVSEAK  120
GNKQHVSEWS RILESVPLPS QQTRQ
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011082950.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082950.11e-104B-box zinc finger protein 22-like isoform X1
SwissprotQ9SYM29e-47BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A0R0HIT51e-50A0A0R0HIT5_SOYBN; Uncharacterized protein
TrEMBLA0A445HUC11e-50A0A445HUC1_GLYSO; B-box zinc finger protein 22 isoform C
STRINGGLYMA12G36260.44e-49(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28922346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.19e-34light-regulated zinc finger protein 1