PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011083005.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

Trihelix

Protein Properties

Length: 349aa MW: 39579.2 Da PI: 6.2865

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011083005.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	78.3	1.1e-24	48	140	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rWt+qe+++Lie+++ +ee+ r g+ + +p+W++vs+++r++g++r+p+qC+++w+nl ++kkik++e + e +s + + ++l XP_011083005.1 48 RWTRQETMVLIEGKKIVEEKGRMGRrstvfgsdQPEPKWDAVSSYCRRHGVSRGPVQCRKRWSNLVSDFKKIKAWEVQVGREGESFWMMRSDL 140 8************999999976444566666*****************************************99977777788777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.05	41	113	IPR017877	Myb-like domain
SuperFamily	SSF46689	4.6E-5	46	115	IPR009057	Homeodomain-like
Pfam	PF13837	8.2E-13	47	137	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.9E-5	48	113	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MVVFAQCSRG IMAPGPNGTH ENAASAPNAI GGQQPATDDR NKTPRHPRWT RQETMVLIEG 60 KKIVEEKGRM GRRSTVFGSD QPEPKWDAVS SYCRRHGVSR GPVQCRKRWS NLVSDFKKIK 120 AWEVQVGREG ESFWMMRSDL RRERRLPGFF DCDVYDVLNG KGSTKASYQL AIVTRSVDEN 180 AGDSIDGVEV EDDDEMVEDE EGGEGLFSEF EQVGREEIRR SPQKEKVQKD GQTDSIPSPV 240 PISEMKYQPF YQADPNQGKK RQEGPHFGAS EFQEGLKRRR QSSNDCHNVD VEDLLIKAIE 300 RNTNLLNAQL EDQKLKCQVE REQQKEQHNS IIASLSKITD ALEKIANKL

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MVVFAQCSRG IMAPGPNGTH ENAASAPNAI GGQQPATDDR NKTPRHPRWT RQETMVLIEG  60
KKIVEEKGRM GRRSTVFGSD QPEPKWDAVS SYCRRHGVSR GPVQCRKRWS NLVSDFKKIK  120
AWEVQVGREG ESFWMMRSDL RRERRLPGFF DCDVYDVLNG KGSTKASYQL AIVTRSVDEN  180
AGDSIDGVEV EDDDEMVEDE EGGEGLFSEF EQVGREEIRR SPQKEKVQKD GQTDSIPSPV  240
PISEMKYQPF YQADPNQGKK RQEGPHFGAS EFQEGLKRRR QSSNDCHNVD VEDLLIKAIE  300
RNTNLLNAQL EDQKLKCQVE REQQKEQHNS IIASLSKITD ALEKIANKL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	258	279	KKRQEGPHFGASEFQEGLKRRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011083005.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011083005.1	0.0	trihelix transcription factor ASR3-like
TrEMBL	A0A2Z7AJ19	1e-115	A0A2Z7AJ19_9LAMI; Trihelix transcription factor GT-2-like
STRING	VIT_17s0000g00270.t01	1e-102	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1786	24	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	7e-68	Trihelix family protein