PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011083009.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family Trihelix
Protein Properties Length: 363aa    MW: 40923.8 Da    PI: 9.4685
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011083009.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.35.4e-1562152186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W+++ +++Liea      +l+rg+l++++W+ev++++      + +++r+ +qCk++++  +k+yk +k    + + + +st+p+f++l+
  XP_011083009.1  62 CWSEEATRTLIEAWGAHYLQLNRGNLRQKHWQEVADAVnrihaTSAKLRRTDVQCKNRIDTTKKKYKIEKSKVVQSNGRYVSTWPHFQSLD 152
                     7**************************************9999999************************99999999999*******997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.5E-2460154No hitNo description
Gene3DG3DSA:1.10.10.606.8E-462126IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MSSQPTTSPP LSTTTSPSPH RPISDDDKLA PSSPPSPAKP EPSSEPTPPA TRTPAFPNRE  60
DCWSEEATRT LIEAWGAHYL QLNRGNLRQK HWQEVADAVN RIHATSAKLR RTDVQCKNRI  120
DTTKKKYKIE KSKVVQSNGR YVSTWPHFQS LDSLIGDSFS KTSNNANGHN RNLRRRASPS  180
PELSPSPPPL PEMMTQHRKS SPVIHDPERD PAMSHLLRLP WSVPVGPRSK RSGPGSVTER  240
NFSVMAAAAA AMEAEDDDDD DDDDEDSGAW GGRLGRKRKG PVEEEGKMVG DGYWRLAEAI  300
TRLAKIYEKV EEAKQRQMVE LEKQRMQFAK DLEIQRMKVF MESQVQLEKL KRVKRNSEND  360
SYL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011083009.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020550151.10.0trihelix transcription factor ASIL2
TrEMBLA0A2G9GJL11e-149A0A2G9GJL1_9LAMI; Transcription factor GT-2
STRINGMigut.M00262.1.p1e-128(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13182370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.13e-35sequence-specific DNA binding transcription factors