PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011083103.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 520aa    MW: 57161.4 Da    PI: 6.2653
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011083103.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.44.1e-16317363455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  XP_011083103.1 317 VHNLSERRRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 363
                     6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR012172.8E-9120132No hitNo description
PRINTSPR012172.8E-9141157No hitNo description
PRINTSPR012172.8E-9173185No hitNo description
PRINTSPR012172.8E-9253278No hitNo description
Gene3DG3DSA:4.10.280.103.7E-21310371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.146313362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.42E-16316367No hitNo description
SuperFamilySSF474595.63E-21316391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-13317363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-18319368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MNHCVPDFHE MEDDFSPPMP SGFSRSIKPA TGEEEIMELL WQNGQVVMQS QNQRPSKKST  60
FGSGSGRGEV VIPAEREIRS SGEEQQHLFM QEDEMASWLQ YPLDDSSFDR DFYTDLLYSA  120
PPPPAPIPTT TPSRPVSEIR PPPVPPRPPI PPPAIKPDNP PRLQNFVHFS RLPNRPRTEP  180
TPRPSVTTAR ESTVVESNET PRYAPESRVS HTVADSRAQV NLESRTATAG GTSARTGELG  240
AGTSSGGSGA SFTASEPPPP PPPPPQRAPP PPEDRKRKAR EADDNECQSE DIEVEAGEAK  300
KQGRGSTSTK RSRAAEVHNL SERRRRDRIN EKMKALQELI PRCNKSDKAS MLDEAIEYLK  360
SLQLQVQMMS MGCGMMPMMY PGMQQYMPAM GMGMGMGMGM DMGMNRPYPS MLPGSAMPNP  420
AAAAHMGPRF PMPPFHMQPV PVPDPSRIQA PNQTDPILNS VTSHNPNQPR MPNFIDPYQQ  480
FLGLQQAQLP LPQNQAVVQP GVSKPSSSKD MGNPDNQQPG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1321326ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011083103.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083103.10.0transcription factor PIF1
TrEMBLA0A2G9GE720.0A0A2G9GE72_9LAMI; Transcriptional repressors of the hairy/E(Spl) family (Contains HLH)
STRINGXP_009591396.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40592341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.13e-36phytochrome interacting factor 3-like 5