PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011083230.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ZF-HD
Protein Properties Length: 260aa    MW: 28927.9 Da    PI: 9.6569
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011083230.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer94.58.9e-3063117358
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                     +v+Y eClkNhAa++Gg+a+DGCgEfm+  geegt++alkC+ACgCHRnFHR+ + 
  XP_011083230.1  63 AVKYMECLKNHAAAIGGNATDGCGEFMAG-GEEGTIEALKCSACGCHRNFHRKIHI 117
                     689*************************9.999*******************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.6E-2764114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.6E-2865114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-2065114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.6866115IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE patternPS000280102126IPR007087Zinc finger, C2H2
Gene3DG3DSA:1.10.10.602.5E-27180247IPR009057Homeodomain-like
SuperFamilySSF466893.79E-17186246IPR009057Homeodomain-like
CDDcd000860.00273188244No hitNo description
TIGRFAMsTIGR015651.1E-27188244IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MSCNSPISHQ EPKPLLSLDH TNTADHQDAV LGAPASSMNT PTTAQVVDHP QKMMINKKSL  60
AGAVKYMECL KNHAAAIGGN ATDGCGEFMA GGEEGTIEAL KCSACGCHRN FHRKIHIHQH  120
HHHHHHQPSS SIIINSHDHA APHSVVLKKR KKKSTTSINY GVTADHHQFL TTSIKPAAEG  180
VSSELVTKRF RTKFSQEQKE KMLGFAEKCE WKLQKVDDSE VRSFCQEIGI KRKVLKVWMH  240
NNKYNFANKT KTLTTTTNIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A9e-221872431773ZF-HD homeobox family protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147151KKRKK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011083230.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0477455e-63KJ047745.1 Sesamum indicum clone TilSSR_18946 microsatellite Sesame_18946 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083230.10.0zinc-finger homeodomain protein 3-like
SwissprotQ9M9S06e-55ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLA0A2G9HR668e-79A0A2G9HR66_9LAMI; Uncharacterized protein
STRINGMigut.H02547.1.p1e-68(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51542338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.22e-52homeobox protein 31