PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011083309.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

WRKY

Protein Properties

Length: 248aa MW: 26903.8 Da PI: 5.1551

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011083309.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	93.9	1.1e-29	76	133	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++ itY+ +Hnh+ XP_011083309.1 76 DSWSWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRLDPTTLLITYSCDHNHP 133 99**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	9.3E-31	67	135	IPR003657	WRKY domain
SuperFamily	SSF118290	1.96E-25	69	135	IPR003657	WRKY domain
PROSITE profile	PS50811	31.548	69	135	IPR003657	WRKY domain
SMART	SM00774	5.9E-34	74	134	IPR003657	WRKY domain
Pfam	PF03106	9.3E-25	76	133	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MEGRFDHGHE DDYSTATTTT APENTADSPL SDEPADEAYA PSPKKSRRGA HKKVVAVPIG 60 DGDGGRSKTE VYPPPDSWSW RKYGQKPIKG SPYPRGYYRC SSSKGCPARK QVERSRLDPT 120 TLLITYSCDH NHPLPTTTSK NHHGSSNSCK VPFPPEECAA FTNQPDIEPA DNGFTELAGE 180 FGWLCNVGST MMDGTMLVGP AWAHADVEAF MPIGEEDKIL FGDLGDLPES SVVFRQCRVE 240 TSCCGGTG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	5e-20	52	136	6	80	Disease resistance protein RRS1
5w3x_D	5e-20	52	136	6	80	Disease resistance protein RRS1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011083309.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011083309.1	0.0	probable WRKY transcription factor 69
Swissprot	Q93WV5	6e-59	WRK69_ARATH; Probable WRKY transcription factor 69
TrEMBL	A0A2G9HZX0	1e-132	A0A2G9HZX0_9LAMI; Uncharacterized protein
STRING	Migut.M00241.1.p	1e-135	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7468	22	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58710.1	5e-63	WRKY DNA-binding protein 69

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]