PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011083447.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

NAC

Protein Properties

Length: 227aa MW: 25630.8 Da PI: 8.2749

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011083447.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	124.4	9.9e-39	16	140	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya.tgkrknratksgyWkatgkdkevls 94 lppGfrF+Ptd+e+v +yL++k+ +++l+ i+e+d+ +++Pw+Lp +++++ yfFs+++ +++ +g+r +r t sg Wkatg++k++++ XP_011083447.1 16 LPPGFRFQPTDQEIVFQYLARKTFSHPLPP-LLIPEIDVSTFDPWELP---GNSDQDKYFFSNKEGNTRrNGDRISRGTCSGHWKATGSTKRIIC 106 79***********************988.67***********...446789999999987665379*****************99 PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyr 127 + vg++k+Lvfykg++p + +tdW+mhey XP_011083447.1 107 PkRMPIVGIRKSLVFYKGKNPLACRTDWIMHEYF 140 8455569************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.72E-45	14	175	IPR003441	NAC domain
PROSITE profile	PS51005	46.621	16	175	IPR003441	NAC domain
Pfam	PF02365	1.6E-21	17	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MEKYCLNVAG DGGSKLPPGF RFQPTDQEIV FQYLARKTFS HPLPPLLIPE IDVSTFDPWE 60 LPGNSDQDKY FFSNKEGNTR RNGDRISRGT CSGHWKATGS TKRIICPKRM PIVGIRKSLV 120 FYKGKNPLAC RTDWIMHEYF IALSGHMDCD MQQKKNSQGS LVRIGNWSLC RVFLKKRISS 180 TAEEVEENYD GYNPRKYDHF ITGADDDVTS DTDSCSASSS SSSSPPH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-34	16	176	15	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011083447.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ066165	5e-35	KJ066165.1 Sesamum indicum clone TilSSR_37366 microsatellite Sesame_37366 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011083447.1	1e-172	NAC domain-containing protein 83
Swissprot	Q9FY93	6e-52	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	A0A2G9GSQ5	4e-76	A0A2G9GSQ5_9LAMI; Uncharacterized protein
STRING	Migut.D01296.1.p	5e-76	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1387	23	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	2e-53	NAC domain containing protein 83

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]