PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011083628.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ERF
Protein Properties Length: 212aa    MW: 23430.2 Da    PI: 5.3811
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011083628.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-183988255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     ykGVr++  +g+WvAeIr+p   + r  r++lg+f+t ++Aa a++ a++kl+g
  XP_011083628.1 39 TYKGVRQRT-WGKWVAEIREP---N-RgSRVWLGTFDTSYDAAVAYDTAARKLYG 88
                    69****999.**********8...3.35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.07E-283898No hitNo description
Gene3DG3DSA:3.30.730.104.4E-303997IPR001471AP2/ERF domain
PfamPF008476.7E-123988IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-213997IPR016177DNA-binding domain
PROSITE profilePS5103221.8383996IPR001471AP2/ERF domain
SMARTSM003806.3E-3639102IPR001471AP2/ERF domain
PRINTSPR003671.5E-94051IPR001471AP2/ERF domain
PRINTSPR003671.5E-96278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MFKSMADMGE EKRVRKPAQA SSRKGCMRGK GGPENAACTY KGVRQRTWGK WVAEIREPNR  60
GSRVWLGTFD TSYDAAVAYD TAARKLYGPD AKVNLPHLYE EKPQGQVQAQ ASVEACKMEN  120
QEYCPSSNLP IFDSFLADEI SPVNGYQGGG EYVSSSGILK NLNVSLPEVD DSYLWAEAAK  180
DTSFQIVHEP AVFASNLDCG KDSNGVPFTW FY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-174096360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A8e-174096663ATERF1
3gcc_A8e-174096663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011083628.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083628.11e-159dehydration-responsive element-binding protein 2D-like
SwissprotQ9LQZ26e-52DRE2D_ARATH; Dehydration-responsive element-binding protein 2D
TrEMBLA0A2G9HYJ11e-108A0A2G9HYJ1_9LAMI; Uncharacterized protein
STRINGMigut.C00778.1.p2e-78(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31552247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.12e-54ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]