PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011083640.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MIKC_MADS
Protein Properties Length: 217aa    MW: 25136.7 Da    PI: 9.7702
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011083640.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.52e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ien++nrqvt+skRrng++KKA+EL vLCda+v++i++sst+kl+ey+s
  XP_011083640.1  9 KKIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMISSTQKLHEYIS 59
                    68***********************************************86 PP
2K-box89.46.7e-3071168198
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                     yqk+  ++l+++++e++q++l+kLk+ ++nL+re+R+++Ge+L++L + ++ +L +++++sl+ iR++K++++ +qie+++kk ++++e++++L 
  XP_011083640.1  71 YQKAVAVDLWSSHYEKMQEHLKKLKDVNRNLRREIRQRMGESLNDLGYDQMVNLIEDMDSSLRLIRERKYKVIGNQIETSKKKLRNVEEIHRNLV 165
                     78889999*************************************************************************************98 PP

           K-box  96 kkl 98 
                      +l
  XP_011083640.1 166 LEL 168
                     776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.034161IPR002100Transcription factor, MADS-box
SMARTSM004323.7E-38160IPR002100Transcription factor, MADS-box
CDDcd002658.26E-38280No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.14E-35395IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-27323IPR002100Transcription factor, MADS-box
PfamPF003192.5E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-273859IPR002100Transcription factor, MADS-box
PfamPF014861.6E-1782166IPR002487Transcription factor, K-box
PROSITE profilePS5129715.27684174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MARGKIQIKK IENQTNRQVT YSKRRNGLFK KAHELTVLCD ARVSIIMISS TQKLHEYISP  60
STTTKQVFDQ YQKAVAVDLW SSHYEKMQEH LKKLKDVNRN LRREIRQRMG ESLNDLGYDQ  120
MVNLIEDMDS SLRLIRERKY KVIGNQIETS KKKLRNVEEI HRNLVLELDA RQEDPHYGLV  180
EHDGDYNSVL GFPHGPPPPG LHGGRAASDL TTFALLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-16160160MEF2C
5f28_B8e-16160160MEF2C
5f28_C8e-16160160MEF2C
5f28_D8e-16160160MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011083640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8533840.0HQ853384.1 Sesamum indicum MADS box transcription factor (DEFB2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083640.11e-162floral homeotic protein DEFICIENS-like
SwissprotP237061e-135DEFA_ANTMA; Floral homeotic protein DEFICIENS
TrEMBLA0A2G9GZM41e-136A0A2G9GZM4_9LAMI; MADS box transcription factor
TrEMBLA0A2G9I0W81e-136A0A2G9I0W8_9LAMI; MADS box transcription factor
STRINGMigut.N03130.1.p1e-125(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23142451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.11e-88MIKC_MADS family protein
Publications ? help Back to Top
  1. Schwarz-Sommer Z, et al.
    Characterization of the Antirrhinum floral homeotic MADS-box gene deficiens: evidence for DNA binding and autoregulation of its persistent expression throughout flower development.
    EMBO J., 1992. 11(1): p. 251-63
    [PMID:1346760]
  2. Sommer H, et al.
    Deficiens, a homeotic gene involved in the control of flower morphogenesis in Antirrhinum majus: the protein shows homology to transcription factors.
    EMBO J., 1990. 9(3): p. 605-13
    [PMID:1968830]
  3. Gallois JL, et al.
    Functional characterization of the plant ubiquitin regulatory X (UBX) domain-containing protein AtPUX7 in Arabidopsis thaliana.
    Gene, 2013. 526(2): p. 299-308
    [PMID:23747397]
  4. Davies B,Egea-Cortines M,de Andrade Silva E,Saedler H,Sommer H
    Multiple interactions amongst floral homeotic MADS box proteins.
    EMBO J., 1996. 15(16): p. 4330-43
    [PMID:8861961]