PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011083780.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family B3
Protein Properties Length: 365aa    MW: 41740.1 Da    PI: 8.3709
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011083780.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.92.6e-20351131498
                     T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     ++l +pkkfa++  +k ++  t+ l+ +sg +W+v l    ++++ +l+ GWk Fv+++ L+e+D+++Fk++g+s+f   v +f+
  XP_011083780.1  35 QQLAIPKKFANNLREKMAG--TVALKGPSGHEWSVGL--VTNGDMLLLGHGWKAFVEDHSLEENDILIFKYNGNSRF--EVLMFD 113
                     679*******666655444..9***************..99999*****************************9999..666665 PP
2B3451.9e-14235326195
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..E CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelv 93 
                     f+ v+  s+v +   +++p + a++h  +  +s ++ l   +g++W  k+ y++++g+  lt+GWk+Fv +n L+e D+++F l+ g+ +   l 
  XP_011083780.1 235 FIVVMRASHVYRGFFMSVPAEWARRHLPN--KSHDIELH-ANGNVWIAKYHYKGYGGG--LTGGWKNFVMENFLEESDVCLFDLIsGTdDAIILD 324
                     788999********************644..55678855.69*************999..9**********************994443444445 PP

                     EE CS
              B3  94 vk 95 
                     vk
  XP_011083780.1 325 VK 326
                     55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.16E-2221113IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.70722115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.9E-2322114IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.9E-1825115IPR003340B3 DNA binding domain
CDDcd100172.02E-2025113No hitNo description
PfamPF023621.9E-1735113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.2E-21229329IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.63E-18230329IPR015300DNA-binding pseudobarrel domain
CDDcd100178.65E-14234329No hitNo description
PfamPF023623.3E-13235319IPR003340B3 DNA binding domain
PROSITE profilePS5086311.998235331IPR003340B3 DNA binding domain
SMARTSM010193.8E-10235331IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MVRDCMDCRK WEEDMYWSRF QTVQFCQVLT GRFDQQLAIP KKFANNLREK MAGTVALKGP  60
SGHEWSVGLV TNGDMLLLGH GWKAFVEDHS LEENDILIFK YNGNSRFEVL MFDQASLCEK  120
TTSYFVKKCE HTESARGNKR GRSLEESFDE TNQSPDDVAD DHRAKKPRSD AAQTPPSRIQ  180
PSRSTSRSRR GIKRGKRGSR AAHPLQLKSR RREVTEEEKQ RAQQMAVAET SENSFIVVMR  240
ASHVYRGFFM SVPAEWARRH LPNKSHDIEL HANGNVWIAK YHYKGYGGGL TGGWKNFVME  300
NFLEESDVCL FDLISGTDDA IILDVKIFRV VEEVIPPSQV MRETSRGTSK RASKFVMDSV  360
SEEDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A4e-1720933422146B3 domain-containing transcription factor VRN1
4i1k_B4e-1720933422146B3 domain-containing transcription factor VRN1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011083780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083780.10.0B3 domain-containing protein REM16-like
TrEMBLA0A2G9HEW81e-131A0A2G9HEW8_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13043817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.17e-54B3 family protein