PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011083863.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

Protein Properties

Length: 238aa MW: 27345.4 Da PI: 10.1008

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011083863.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	45.4	1.4e-14	129	215	1	93
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k ++ps+ + +l l+ +f+++ ++ ++ + l de+ ++W v + rk++ l++GWk+F +++L +gD +vF+l++ + f+ + XP_011083863.1 129 FVKSMLPSHISGGFWLGLSSDFCKRK-LPR-NDGVMLLVDEQEEEWPVIYLARKTG----LSGGWKKFSVDHDLADGDALVFQLIRPTVFKVF 215 89*******************777.443.34479999*******656665....**********************987777544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	4.9E-23	123	221	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.3E-19	124	220	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.06E-22	127	218	No hit	No description
SMART	SM01019	1.1E-20	129	220	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.506	129	220	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.7E-12	129	214	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MVMSKVKYEA LRQQRLEENK KRMEELHLPL LSQALKNASS PKSSPMKKTK PRIARTELVP 60 VRRSERFSNK SAPQYKEVTF YERVQLPRRL TNRTRDLSNR VYASDEAREC AIKKAEELEA 120 TLGSDSPTFV KSMLPSHISG GFWLGLSSDF CKRKLPRNDG VMLLVDEQEE EWPVIYLARK 180 TGLSGGWKKF SVDHDLADGD ALVFQLIRPT VFKVFITRVD GYEKTADKKT DKVEGTEF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011083863.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011083863.1	1e-177	B3 domain-containing protein At5g42700
Refseq	XP_011083864.1	1e-177	B3 domain-containing protein At5g42700
Swissprot	Q9FMZ4	9e-69	Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBL	A0A1S3X3J5	1e-114	A0A1S3X3J5_TOBAC; B3 domain-containing protein At5g42700-like
TrEMBL	A0A1U7X950	1e-114	A0A1U7X950_NICSY; B3 domain-containing protein At5g42700-like
STRING	XP_009783454.1	1e-115	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1628	23	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	2e-65	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]