PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011083914.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

TALE

Protein Properties

Length: 618aa MW: 68490.6 Da PI: 7.3334

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011083914.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.7	1.1e-09	454	486	22	54
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 ++yps++++ L++++gL+++qV++WF N R + XP_011083914.1 454 HPYPSEADKHMLSRQTGLSKNQVSNWFINARVR 486 89*****************************88 PP
2	BELL	108.4	4.4e-35	309	380	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 er+e+q++k kLl++l+eVd rY++y+eq+q+++++F+ ++g g+a+pYt lA+ a+SrhFrc+kdaia+q+ XP_011083914.1 309 ERAEHQRRKMKLLTMLDEVDARYRRYCEQMQAIVNAFDSAVGRGAAAPYTGLAQTAMSRHFRCIKDAIAGQL 380 799******************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.1E-58	239	378	IPR006563	POX domain
Pfam	PF07526	6.1E-47	243	377	IPR006563	POX domain
PROSITE profile	PS50071	12.082	427	490	IPR001356	Homeobox domain
SMART	SM00389	2.9E-9	430	494	IPR001356	Homeobox domain
CDD	cd00086	4.79E-11	430	491	No hit	No description
SuperFamily	SSF46689	1.8E-17	431	497	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.8E-28	433	496	IPR009057	Homeodomain-like
Pfam	PF05920	1.5E-18	447	486	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 618 aa Download sequence Send to blast
MSQSFLQEIS NFSNAYERSM TAKQQGDWML RVQGFEQDLS GQQSVPVYDT GGMLTEIINL 60 PWRKPAGTDD FSPDDQIRPN YPWPQKQHLL NEAASQLSFM NPHVKVPNSS DSSHLQGFHL 120 LSPVQEPDME TPSELSWIPG SSSGSFDLGR TTRIVEGQGL SLSLSSSLRN MESNKFDKTI 180 SLGHGELYFH SQELQAGPNS HNLCGSKDLG TNHQLFHSPR RVLDHGNQAH PGLVESARTG 240 PNILRNSRYL SAAQELLQEF CCVGKGQLKN QRLKNQDGNP NSAMDGGGDA AAGPSSSSKD 300 QHHPISPAER AEHQRRKMKL LTMLDEVDAR YRRYCEQMQA IVNAFDSAVG RGAAAPYTGL 360 AQTAMSRHFR CIKDAIAGQL KETCEGLGEK DVGGGGGLTR GETPRLKLLE QKYRQQKSLQ 420 RVGMLDPESW RPQRGLPDGS VNILRAWLFD HFLHPYPSEA DKHMLSRQTG LSKNQVSNWF 480 INARVRLWKP MVEEMYQQEF REEVQPATAP KEETTSEPSS QTPTHKTGAT TTAPPPISLS 540 RTENEKGPSI NNTSSAACED SPTREYRCFM ADAAAGMMVR AGSQAGDVSL TLGLKHSENV 600 PKMSRLSIRD FEAYRIKG

Sequence ? help Back to Top

Protein Sequence Length: 618 aa Download sequence Send to blast

MSQSFLQEIS NFSNAYERSM TAKQQGDWML RVQGFEQDLS GQQSVPVYDT GGMLTEIINL  60
PWRKPAGTDD FSPDDQIRPN YPWPQKQHLL NEAASQLSFM NPHVKVPNSS DSSHLQGFHL  120
LSPVQEPDME TPSELSWIPG SSSGSFDLGR TTRIVEGQGL SLSLSSSLRN MESNKFDKTI  180
SLGHGELYFH SQELQAGPNS HNLCGSKDLG TNHQLFHSPR RVLDHGNQAH PGLVESARTG  240
PNILRNSRYL SAAQELLQEF CCVGKGQLKN QRLKNQDGNP NSAMDGGGDA AAGPSSSSKD  300
QHHPISPAER AEHQRRKMKL LTMLDEVDAR YRRYCEQMQA IVNAFDSAVG RGAAAPYTGL  360
AQTAMSRHFR CIKDAIAGQL KETCEGLGEK DVGGGGGLTR GETPRLKLLE QKYRQQKSLQ  420
RVGMLDPESW RPQRGLPDGS VNILRAWLFD HFLHPYPSEA DKHMLSRQTG LSKNQVSNWF  480
INARVRLWKP MVEEMYQQEF REEVQPATAP KEETTSEPSS QTPTHKTGAT TTAPPPISLS  540
RTENEKGPSI NNTSSAACED SPTREYRCFM ADAAAGMMVR AGSQAGDVSL TLGLKHSENV  600
PKMSRLSIRD FEAYRIKG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	2e-16	436	494	5	63	Homeobox protein Meis2
3k2a_B	2e-16	436	494	5	63	Homeobox protein Meis2
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269\|PubMed:17873098}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011083914.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011083914.1	0.0	BEL1-like homeodomain protein 4 isoform X1
Refseq	XP_020551210.1	0.0	BEL1-like homeodomain protein 4 isoform X2
Swissprot	Q94KL5	1e-124	BLH4_ARATH; BEL1-like homeodomain protein 4
TrEMBL	A0A2G9G0C1	0.0	A0A2G9G0C1_9LAMI; Transcription factor MEIS1
STRING	XP_009614985.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6072	17	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23760.3	1e-116	BEL1-like homeodomain 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]