PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011083918.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family B3
Protein Properties Length: 318aa    MW: 36982.1 Da    PI: 10.3241
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011083918.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.41.5e-19351131498
                     T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     ++l +pkkfa++  +k ++   + l+ +sg +W+v+l    +++  +l+ GWk Fv+++ L+e+D+++Fk++g+s+f   v +f+
  XP_011083918.1  35 QQLAIPKKFANNLREKMAG--SVALKGPSGHEWSVEL--VTNGDILLLRHGWKAFVEDHSLEENDILIFKYNGNSRF--EVLMFD 113
                     679*******777767666..5***************..999999****************************9999..777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.88E-2221114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.83422115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.8E-2322114IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.0E-1625115IPR003340B3 DNA binding domain
CDDcd100177.71E-2025113No hitNo description
PfamPF023624.8E-1735113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.1E-11231296IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.02E-10233298IPR015300DNA-binding pseudobarrel domain
CDDcd100176.93E-7234283No hitNo description
SMARTSM010190.14235318IPR003340B3 DNA binding domain
PROSITE profilePS508637.133235318IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MVRDCMDCRK WEEDMYWSRF QTVQFCQVLT GRFDQQLAIP KKFANNLREK MAGSVALKGP  60
SGHEWSVELV TNGDILLLRH GWKAFVEDHS LEENDILIFK YNGNSRFEVL MFDQESLCEK  120
ATSYFVKKCE HTESARGNKR RRSLEESFDE TNQSSDDVAD DHRAKKPKSD AARTPPSRIQ  180
PSRSTSRSRR GIKKGKRGSR GAYPLQLKSR RREVTEEEKQ RAQQMAVAVS SDNSFIVVMR  240
ASHVYKGFFM SIPAEWARLH LPNKSHDIEL RVKDNIWKAK YHYKGYGGGL TGGWKNWKRR  300
ISSLKISWKN LMFVYLIS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011083918.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083918.10.0B3 domain-containing protein REM16-like
TrEMBLA0A2R6RN221e-112A0A2R6RN22_ACTCH; B3 domain-containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13043817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-49B3 family protein