PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011084032.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

C2H2

Protein Properties

Length: 237aa MW: 27178.7 Da PI: 8.1816

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011084032.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.00058	114	137	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C++C+k+F+ L +H + H XP_011084032.1 114 WQCGYCKKVFRAEKFLDQHFDNrH 137 58**********999999976655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	116	137	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MSGREMGKKR ASPVHSIFLL LMALQLFSAT SSLSHSYSDE GIDETASRTL KEEEPQVHCS 60 RERSRAAWKI IEEYLLPFVE REKYQLSSQC RLHPNNDIFR DQEEHKIHID INDWQCGYCK 120 KVFRAEKFLD QHFDNRHYNL LNVSHGKCLA DLCGALHCDF VMKSQSRKTK CNPAAAARNR 180 HLCEDLADSC FPVNEGPSAA RLHEFFLRQF CDAHSCSRGR KPFSGGGRRN EKGNTTA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011084032.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011084032.1	1e-179	uncharacterized protein LOC105166382 isoform X2
TrEMBL	A0A4D8ZKG3	1e-118	A0A4D8ZKG3_SALSN; Uncharacterized protein
STRING	Migut.I00466.1.p	1e-119	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63280.1	1e-98	C2H2-like zinc finger protein