PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011084088.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family B3
Protein Properties Length: 323aa    MW: 36838.1 Da    PI: 4.9461
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011084088.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.18.8e-151091188
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88
                    ffk +  s  +  ++l +p  f+ +++g    +   +l+d+ ++sW v++   k +++++l++GW +Fv +n ++ gD++vF+  g+ 
  XP_011084088.1 10 FFKFF--SPETCANQLEIPSAFILSIQGA--LPNNAILRDKYSNSWHVNV--AKVGDTFYLKDGWAKFVGDNFINRGDMLVFECYGKG 91
                    78888..77777789***********877..7778***************..*******************************55533 PP
2B344.72.4e-142343191198
                     HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
              B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                     +++g l++p + ++  +++   +k++ l d+sgr+W+ +l+ ++ +++y+ ++GW++ +k n + + D ++ ++++r ++  l+++++r
  XP_011084088.1 234 GRKGELYIPMDLIKVQNLN--LPKEILLLDPSGRKWSARLKQWRDGRTYY-RGGWRRLCKTNLIGDDDLCICEFIKRgERLCLNISFVR 319
                     67889********777877..889****************9999987765.88*********************998677766666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.04E-204103IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.1E-204103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.0978101IPR003340B3 DNA binding domain
PfamPF023627.3E-121091IPR003340B3 DNA binding domain
SMARTSM010194.1E-510101IPR003340B3 DNA binding domain
CDDcd100174.48E-111086No hitNo description
SuperFamilySSF1019368.63E-19222310IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-16222310IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.196224321IPR003340B3 DNA binding domain
CDDcd100171.23E-12225315No hitNo description
SMARTSM010195.0E-15227319IPR003340B3 DNA binding domain
PfamPF023628.7E-13232319IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MGTKSNRHAF FKFFSPETCA NQLEIPSAFI LSIQGALPNN AILRDKYSNS WHVNVAKVGD  60
TFYLKDGWAK FVGDNFINRG DMLVFECYGK GLFSTKIYDS SGCEKKGVGA FRATNEETKA  120
VMEEDKEDEG DDEEQEGTTK DSDEKEEEEG KDEDETNDND DNYIVVSETD DEGEEEIRTS  180
NVHAPIGKHG TSSNTSEKQS RCRRVPDIYG AEIFRTGLAT YPKHPYFITK INPGRKGELY  240
IPMDLIKVQN LNLPKEILLL DPSGRKWSAR LKQWRDGRTY YRGGWRRLCK TNLIGDDDLC  300
ICEFIKRGER LCLNISFVRA NRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011084088.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084088.10.0putative B3 domain-containing protein At5g66980
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10912264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.13e-14B3 family protein