PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011084160.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

bHLH

Protein Properties

Length: 198aa MW: 21931.7 Da PI: 8.1285

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011084160.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.9	1.3e-11	131	176	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri ++ +L++l+P+ +k s a++L +Av++I+sLq XP_011084160.1 131 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIRSLQ 176 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.246	125	175	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-15	128	189	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.15E-12	129	180	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.2E-15	130	187	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.9E-13	131	181	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.7E-9	131	176	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010119	Biological Process	regulation of stomatal movement
GO:0005829	Cellular Component	cytosol
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MTDNGSGISR LNSQLSFTRP KEALSRISEE TENVGDGVST DNAQRKSTHS YATAGGFTMW 60 DDTNPLTFSV APPKRAKTIT NDVDDIESQF QFGLPQGALE MASMDKLLHI PQDSVPCKIR 120 AKRGCATHPR SIAERERRTR ISGKLKKLQD LVPNMDKQTS YADMLDLAVQ HIRSLQNQVQ 180 KLNEELDCCT CGCKKTTG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011084160.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011084160.1	1e-148	transcription factor bHLH128 isoform X1
Swissprot	Q8H102	4e-59	BH128_ARATH; Transcription factor bHLH128
TrEMBL	A0A2G9HAB8	1e-108	A0A2G9HAB8_9LAMI; Uncharacterized protein
STRING	XP_009620076.1	1e-102	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6455	23	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	2e-56	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]