PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011084321.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 1405aa    MW: 155732 Da    PI: 6.5813
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011084321.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.001413731399123
                      EEET..TTTEEESSHHHHHHHHHH..T CS
         zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                      y+C+   Cg +F+  s++ rH r+  H
  XP_011084321.1 1373 YVCKvkGCGLTFRFVSDFSRHRRKtgH 1399
                      99*********************9777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005451.5E-141555IPR003349JmjN domain
PROSITE profilePS5118313.7161657IPR003349JmjN domain
PfamPF023752.1E-141750IPR003349JmjN domain
SMARTSM005582.0E-44296465IPR003347JmjC domain
PROSITE profilePS5118432.57296465IPR003347JmjC domain
SuperFamilySSF511971.51E-26297463No hitNo description
PfamPF023734.6E-34330448IPR003347JmjC domain
SMARTSM003552212901312IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.19813131342IPR007087Zinc finger, C2H2
SMARTSM003550.09213131337IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.17E-513141350No hitNo description
Gene3DG3DSA:3.30.160.602.1E-413141341IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028013151337IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.3E-913421367IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.71813431372IPR007087Zinc finger, C2H2
SMARTSM003550.002613431367IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028013451367IPR007087Zinc finger, C2H2
SuperFamilySSF576673.58E-1013531395No hitNo description
Gene3DG3DSA:3.30.160.605.0E-1013681396IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.97413731399IPR007087Zinc finger, C2H2
SMARTSM003550.3513731399IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028013751399IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1405 aa     Download sequence    Send to blast
MKNVVIPKWL ERLPLAPEFR PTDTEFADPI AYISKIEKEA SAFGICKVIP PLPKPSRKYV  60
LHNLNKSLSK CPELGLDASL VTSSKLDSGA RDNSDRAVNS GESRAVFTTR HQELGCEKGK  120
RVKGADADHG AAAQKQVWQS GEVYTLEQFE AKAKNFAKSQ LGLLKEVNPL VIEAMFWKAA  180
SEKPIYVEYA NDVPGSAFGE PEGSLRYFDR RRRRRRRKRH SFDRNNLGNS DSKIDQVDTG  240
NSISGNNDSG SQNNHNICTE TASNSLLSNQ LHHGASFSGR KDFEGGDEME GTAGWKLSNC  300
PWNLQVIARS PGSLTRFMPD DIPGVTSPMI YIGMLFSWFA WHVEDHELHS LNFLHMGSAK  360
TWYAVPADYA FNFEETIRLH GYGGNADRLV ALSLLGEKTT VLSPEIIVAS GIPCCRLVQN  420
PGEFVVTFPR AYHIGFSHGF NCGEAANFGT PKWLTIAKEA AVRRAAMNYL PMLSHQQLLY  480
LLTMSFISRI PRSLLPGVRS SRLRDRQKEE RELLVKRAFI EDILHENNLL TVLLQRNSSY  540
TAVLWDVESM PSSSKESEPC KETDVALTSA EKDSPQNNDD IHDLSQLSKY IGAVGFDLND  600
DDLAYDFQIE SGTLPCVACG ILGFPFMTVV QPSEVASTNL LLMDPLIVSA ESGQPSELNP  660
VKEVAAKDIT DKTKLNKKDL HHVNEASSVA ESSQSTHQAM DQTSVCSPSS SLEHEALSSQ  720
VKIVKGWNIS NVSLKPRIFC LEHAIDIEGL LSSKGGANVL VICHSDFQKI KTHAAVIAEE  780
IGVPFCYTDV ELSNASPEDL NLIDIAIDRE EQVDCAEDWT SKLSINLQHC VKVKKNSPSK  840
NVQHLLSLGG LFCDATPISN ASGVKWLSRK LRSKRHLKRL LQSKRSDSKE DMNTNEEHQM  900
AKKDVKIIQY SRKRYKSRSS AGIQVPIESN NLVVRDTLDT EAEDLDKEDK NMSRSILTRV  960
ETNGKSFSGP SALPYDSISE SLRDHPGLLS RRGSFENSFP SHHANSVITS TPIIENVEAQ  1020
TSISPPNELA VSANVGSTSD ENGIGNAAED VNLQKEETMD ESTVATRACD QVAETDLEML  1080
HNVQSDGDNL TKEASEHGGS SNCSDDEPPT GRDEQMEAIS DQLVTESEVS KSLSSERQQH  1140
IERDGDNKGD VLGYTAGIYE STSASTEECL PGDTLVDVAS HNDNGESVSL LERKDSDDAN  1200
SIMAQSSSIA KTGRKRKREV NLQSEDQFHV GGFIRGPCEG LRPRAREVAT GHVPDNKKPA  1260
KETPTLSKVR KATDHSVSRK DKKENQKGRY KCELDGCTMS FQTKAELLLH KGNRCPVEGC  1320
RKKFNSHKYA IQHQRVHDDD RPLKCPWDGC TMSFKWAWAR TEHLRVHTGE RPYVCKVKGC  1380
GLTFRFVSDF SRHRRKTGHY VSPLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A1e-561290140123134Lysine-specific demethylase REF6
6a58_A1e-561290140123134Lysine-specific demethylase REF6
6a59_A1e-561290140123134Lysine-specific demethylase REF6
6ip0_A1e-52286479149346Transcription factor jumonji (Jmj) family protein
6ip4_A1e-52286479149346Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205214RYFDRRRRRR
2209216RRRRRRRR
3210216RRRRRRR
4210218RRRRRRRKR
5211218RRRRRRKR
6212218RRRRRKR
712561270KKPAKETPTLSKVRK
Functional Description ? help Back to Top
Source Description
UniProtActs probably as a histone 'Lys-4' (H3K4me) demethylase. Involved in transcriptional gene regulation. Acts as a repressor of the photoperiodic flowering pathway and of FT. Binds around the transcription start site of the FT locus. {ECO:0000269|PubMed:15377760, ECO:0000269|PubMed:18467490, ECO:0000269|PubMed:19946624}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011084321.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084321.10.0probable lysine-specific demethylase ELF6
SwissprotQ6BDA00.0ELF6_ARATH; Probable lysine-specific demethylase ELF6
TrEMBLA0A2Z7ASC60.0A0A2Z7ASC6_9LAMI; Uncharacterized protein
STRINGXP_009589507.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48351721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.10.0C2H2 family protein
Publications ? help Back to Top
  1. Heidari B,Nemie-Feyissa D,Kangasjärvi S,Lillo C
    Antagonistic regulation of flowering time through distinct regulatory subunits of protein phosphatase 2A.
    PLoS ONE, 2013. 8(7): p. e67987
    [PMID:23976921]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Crevillén P, et al.
    Epigenetic reprogramming that prevents transgenerational inheritance of the vernalized state.
    Nature, 2014. 515(7528): p. 587-90
    [PMID:25219852]
  4. Yang H,Howard M,Dean C
    Physical coupling of activation and derepression activities to maintain an active transcriptional state at FLC.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9369-74
    [PMID:27482092]