PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011084326.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ARF
Protein Properties Length: 676aa    MW: 74675.5 Da    PI: 6.7718
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011084326.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.94e-23123223198
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+lt+sd+++ g +++p+ +ae++        +++ +  t+  +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF   +++
  XP_011084326.1 123 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TILAKDVHGEVWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFL--RTE 213
                     89****************************986445444..8999*********************************************..458 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                     ++el++++ r
  XP_011084326.1 214 NGELCLGIQR 223
                     9999999877 PP
2Auxin_resp113.42.1e-37291374183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                     aa+ a+++ +FevvY+Prast+eFvv+++ v++a+++++++GmRfkmafetedss++++ +Gtv++v+  dpv WpnS+Wr+L+
  XP_011084326.1 291 AASLAASGRPFEVVYYPRASTPEFVVRASAVRAAMRIQWCAGMRFKMAFETEDSSRISWfMGTVSSVQVDDPVYWPNSPWRLLQ 374
                     678999****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.62E-29115221IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-36115225IPR015300DNA-binding pseudobarrel domain
CDDcd100175.54E-21122221No hitNo description
SMARTSM010191.5E-21123225IPR003340B3 DNA binding domain
PROSITE profilePS5086313.126123225IPR003340B3 DNA binding domain
PfamPF023622.1E-21123224IPR003340B3 DNA binding domain
PfamPF065072.3E-32291374IPR010525Auxin response factor
PROSITE profilePS5174518.125590670IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MINAMNSVGR PMNQVEKCLD PQLWHACAGG MAQIPPINSK VYYFPQGHSE HANKAVDFHE  60
FPRISPLIPC RVSSISYLAD SETDEVYAKM RLVPLGRNEC DVDDEGGLMG FSKNEEKEKP  120
NSFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYSAEPPV QTILAKDVHG EVWKFRHIYR  180
GTPRRHLLTT GWSNFVNQKK LVAGDSIVFL RTENGELCLG IQRAKTGISG GPEVLSGWST  240
GAANCASALY KGFSGSQSES LCVGSVRKRN GSCDSGARER GNVSAESVIE AASLAASGRP  300
FEVVYYPRAS TPEFVVRASA VRAAMRIQWC AGMRFKMAFE TEDSSRISWF MGTVSSVQVD  360
DPVYWPNSPW RLLQVAWDEP ELLQNVKRVS PWLVELVSHI PAIPLSPFSP PRKRPRPPEF  420
PLGQLHMPMT LLRNPLSPSS PLCCLPDNIS SGIQGARHAQ FLLSSSDPHF NNLQMGPHPF  480
NFKPLPKILT GSRLENSNFD PLSCSLQTKS STLSLNENNE TKSPVFLLFG QPILTEQQIS  540
RSCSLDTEEN MGNVSNGSVS AVIQNSPPEA CSEGEFPRLK DQKLELGLET TNCKVFLESE  600
DVGRTLDLSS ISSYEELYRK LASMFSLQRS DTSTNVVYSD AEGATRPTED VPFGDFMKKA  660
RRLTILIESG RENRGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A7e-791939551388Auxin response factor 5
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1412416KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011084326.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084326.10.0auxin response factor 18
RefseqXP_020551141.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2G9GV600.0A0A2G9GV60_9LAMI; Auxin response factor
STRINGXP_009784518.10.0(Nicotiana sylvestris)
STRINGXP_009602628.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]