PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011084534.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

Dof

Protein Properties

Length: 252aa MW: 28381.6 Da PI: 9.5155

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011084534.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.8	1.3e-39	30	91	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ke+al+cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss XP_011084534.1 30 KEQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTQGGTLRNVPVGGGSRKNKRSSS 91 6899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-26	17	82	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.2E-34	32	88	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.273	34	88	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	36	72	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MATAWPQGIG VVRPVENPRT STEKKPRPNK EQALNCPRCN STNTKFCYYN NYSLSQPRYF 60 CKTCRRYWTQ GGTLRNVPVG GGSRKNKRSS SSSSKKVMIP NLSPPKFSPQ NPKIHDGQAL 120 NVGYNPPIYN DFAPLVQFGL DPKNPNYNNH PSHSFSLLTS TDQLLSLPVV SMHHDHFKPS 180 SLSFSLDGLG NLQNHTNSSR TLFPFEELKP VSTAHDDQLH EFGLQDHHRE HEGDHHQSNH 240 GYWSGMLSGG SW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011084534.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011084534.1	0.0	dof zinc finger protein DOF4.6-like
Swissprot	Q8LAP8	2e-49	DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBL	A0A2Z7A7F5	5e-79	A0A2Z7A7F5_9LAMI; Uncharacterized protein
STRING	EOY23618	6e-67	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	5e-36	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]