PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011084678.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family AP2
Protein Properties Length: 659aa    MW: 73095.4 Da    PI: 6.4687
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011084678.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.77.9e-15244303155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  XP_011084678.1 244 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 303
                     57*******************666664478446*************************98 PP
2AP246.87.4e-15346397155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  XP_011084678.1 346 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 397
                     57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.07E-17244313IPR016177DNA-binding domain
PfamPF008471.2E-11244303IPR001471AP2/ERF domain
CDDcd000182.20E-22244313No hitNo description
SMARTSM003802.0E-29245317IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-15245312IPR001471AP2/ERF domain
PROSITE profilePS5103219.164245311IPR001471AP2/ERF domain
PRINTSPR003674.3E-6246257IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-17346407IPR016177DNA-binding domain
PfamPF008479.2E-10346397IPR001471AP2/ERF domain
CDDcd000183.43E-25346407No hitNo description
SMARTSM003801.4E-33347411IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-18347405IPR001471AP2/ERF domain
PROSITE profilePS5103219.177347405IPR001471AP2/ERF domain
PRINTSPR003674.3E-6387407IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    Send to blast
MAANSMNNWL GFSLSHHQEH SQNSSVCDQL GEFNSDEISA TQVSGECFDL SSHSSIPSLN  60
LPPAPFAILE ALNRNPTHSQ GWNMKDMSMN SFSCSQNQEE TPKLENFLGV GGRNFTDHNQ  120
EQNELQAGCN PIRDTGYNIY QESDTNNMSS TGGIINGMNS STMGLSMIKN WLRNNRAPPQ  180
STDNKVRGEA EPPQAAVPQT LSLSMSTGSS SDSKLQAAAD SQSSGGAIES VPRKSIDTFG  240
QRTSIYRGVT RHRWTGRYEA HLWDNSCRRE GQTRKGRQVY LGGYDKEEKA ARAYDLAALK  300
YWGTTTTTNF PISNYEKEME EMKNMTRQEY VASLRRKSSG FSRGASIYRG VTRHHQHGRW  360
QARIGRVAGN KDLYLGTFST QEEAAEAYDI AAIKFRGLNA VTNFEISRYD VKSIMESATL  420
PIGGAAKRLK DAESAEMALE MHRANEGNLN LHLAEEQINS YSNLAFQQAQ SLNTYPYAHQ  480
RLWCKQEQDP DVGNDGFNYV HRQFQLGSTQ NFLPLHSLMS LDASSMEQNS GSNSLVYGNN  540
GTNGSSSFMV PMMDVQDGNQ NHENGIVGNY HREEKPVLGY ESMFGSADAY QQARNLYYQQ  600
LSQQSSSINT GIGKIGLYND QGSTCNNSWI PTAVPTLEAR GNKMAVCHGA STFTVWNNT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011084678.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084678.10.0AP2-like ethylene-responsive transcription factor AIL1 isoform X2
SwissprotQ8LSN21e-150BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A2G9I0A40.0A0A2G9I0A4_9LAMI; Uncharacterized protein
STRINGcassava4.1_032986m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-134AP2 family protein