PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011084679.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family AP2
Protein Properties Length: 627aa    MW: 69718.8 Da    PI: 6.8999
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011084679.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.87.4e-15212271155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  XP_011084679.1 212 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 271
                     57*******************666664478446*************************98 PP
2AP246.96.9e-15314365155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  XP_011084679.1 314 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 365
                     57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.88E-17212281IPR016177DNA-binding domain
CDDcd000184.47E-22212281No hitNo description
PfamPF008471.1E-11212271IPR001471AP2/ERF domain
SMARTSM003802.0E-29213285IPR001471AP2/ERF domain
PROSITE profilePS5103219.164213279IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-15213280IPR001471AP2/ERF domain
PRINTSPR003674.0E-6214225IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-17314375IPR016177DNA-binding domain
CDDcd000187.16E-25314375No hitNo description
PfamPF008478.6E-10314365IPR001471AP2/ERF domain
PROSITE profilePS5103219.177315373IPR001471AP2/ERF domain
SMARTSM003801.4E-33315379IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-18315373IPR001471AP2/ERF domain
PRINTSPR003674.0E-6355375IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MAANSMNNWL GFSLSHHQEH SQNSSVCDQL APFAILEALN RNPTHSQAGW NMKDMSMNSF  60
SCSQNQEETP KLENFLGVGG RNFTDHNQEQ NELQAGCNPI RDTGYNIYQE SDTNNMSSTG  120
GIINGMNSST MGLSMIKNWL RNNRAPPQST DNKVRGEAEP PQAAVPQTLS LSMSTGSSSD  180
SKLQAAADSQ SSGGAIESVP RKSIDTFGQR TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ  240
TRKGRQVYLG GYDKEEKAAR AYDLAALKYW GTTTTTNFPI SNYEKEMEEM KNMTRQEYVA  300
SLRRKSSGFS RGASIYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA  360
IKFRGLNAVT NFEISRYDVK SIMESATLPI GGAAKRLKDA ESAEMALEMH RANEGNLNLH  420
LAEEQINSYS NLAFQQAQSL NTYPYAHQRL WCKQEQDPDV GNDGFNYVHR QFQLGSTQNF  480
LPLHSLMSLD ASSMEQNSGS NSLVYGNNGT NGSSSFMVPM MDVQDGNQNH ENGIVGNYHR  540
EEKPVLGYES MFGSADAYQQ ARNLYYQQLS QQSSSINTGI GKIGLYNDQG STCNNSWIPT  600
AVPTLEARGN KMAVCHGAST FTVWNNT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011084679.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084679.10.0AP2-like ethylene-responsive transcription factor BBM isoform X3
SwissprotQ8LSN21e-142BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A2G9I0A40.0A0A2G9I0A4_9LAMI; Uncharacterized protein
STRINGcassava4.1_032986m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-129AP2 family protein