PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011084729.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 243aa    MW: 28020.6 Da    PI: 7.8207
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011084729.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.9e-161562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W+++Ed++l ++v ++G g+W+++a   g+ R +k+c++rw +yl
   XP_011084729.1 15 KGLWSPDEDQKLRNYVLKHGHGCWSSVAINAGLQRNGKSCRLRWINYL 62
                     678*******************************************97 PP
2Myb_DNA-binding47.83.4e-1568111146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++  E+e  + +++ lG++ W+ Ia++++ gRt++++k++w++
   XP_011084729.1  68 RGAFSVAEEETVLSLHRILGNK-WSQIAQHLP-GRTDNEIKNYWHS 111
                      899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.4321066IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-221165IPR009057Homeodomain-like
SuperFamilySSF466892.66E-2913109IPR009057Homeodomain-like
SMARTSM007171.5E-121464IPR001005SANT/Myb domain
PfamPF002494.6E-151562IPR001005SANT/Myb domain
CDDcd001673.95E-101862No hitNo description
Gene3DG3DSA:1.10.10.604.5E-2466116IPR009057Homeodomain-like
SMARTSM007176.5E-1467115IPR001005SANT/Myb domain
PROSITE profilePS5129420.12767117IPR017930Myb domain
PfamPF002491.0E-1368112IPR001005SANT/Myb domain
CDDcd001676.64E-970110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MVANRALKSI KKHKKGLWSP DEDQKLRNYV LKHGHGCWSS VAINAGLQRN GKSCRLRWIN  60
YLRPGLKRGA FSVAEEETVL SLHRILGNKW SQIAQHLPGR TDNEIKNYWH SCLKKRRVVK  120
MSETEAQTTK NNYKYGEIRG LESSTSFQHI ERLAQQCSFP KVLFAEWLSF DHFKNEGNLD  180
NHSSSPEDNL VDGLLVNEGT SCSESDRKQD EVSVDDMLRL EDLESCLIDY FPGEFCMSYD  240
MYV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-24151167107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011084729.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084729.10.0transcription factor LAF1-like
SwissprotQ9M0K41e-56LAF1_ARATH; Transcription factor LAF1
TrEMBLA0A2G9H7G86e-85A0A2G9H7G8_9LAMI; Transcription factor, Myb superfamily
STRINGcassava4.1_026616m2e-78(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48920.14e-61myb domain protein 45
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]