PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011084743.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

Nin-like

Protein Properties

Length: 193aa MW: 22447.7 Da PI: 9.8871

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011084743.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83	2.9e-26	86	135	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + ++le+++kyF+ pi+ AA+eL+v+lTvLK++CR+++I RWPhRkiksl XP_011084743.1 86 SGLKLEEIQKYFDVPITVAARELNVGLTVLKKRCRELNITRWPHRKIKSL 135 5699********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.132	71	156	IPR003035	RWP-RK domain
Pfam	PF02042	1.0E-22	88	135	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MGMITPHDDL NDVGEIFGEL GLWDFDQPSF NNHISITNSN SDIKNHVLMN NNDSTHHTKM 60 TYSSSSGTTM TDTNMEFRRS GRHKSSGLKL EEIQKYFDVP ITVAARELNV GLTVLKKRCR 120 ELNITRWPHR KIKSLKSLIH NVKELGLTNE IEMLEEHKRM VEKIPEMELT ERTKKLRQAC 180 FKANYKKRRS LHP

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011084743.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011084743.1	1e-143	protein RKD4
Swissprot	Q9LVU8	5e-43	RKD4_ARATH; Protein RKD4
TrEMBL	A0A2G9G3C3	6e-79	A0A2G9G3C3_9LAMI; Uncharacterized protein
TrEMBL	A0A2G9HV85	7e-79	A0A2G9HV85_9LAMI; Uncharacterized protein
STRING	Migut.F01022.1.p	2e-74	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12143	19	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	6e-45	RWP-RK domain-containing protein

Publications ? help Back to Top
Azpeitia E,Davila-Velderrain J,Villarreal C,Alvarez-Buylla ER Gene regulatory network models for floral organ determination. Methods Mol. Biol., 2014. 1110: p. 441-69 [PMID:24395275]