PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011084760.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ERF
Protein Properties Length: 199aa    MW: 22182.7 Da    PI: 8.4387
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011084760.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.7e-1958107255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr++  +g+WvAeIr+p   + r +r++lg+f t  eAa+a++ a+++l+g
  XP_011084760.1  58 TYRGVRQRT-WGKWVAEIREP---N-RgARVWLGTFNTSLEAAQAYDDAARRLYG 107
                     69****999.**********8...3.35************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.48E-2757113No hitNo description
Gene3DG3DSA:3.30.730.101.3E-2958115IPR001471AP2/ERF domain
PfamPF008471.4E-1358107IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-2058115IPR016177DNA-binding domain
PROSITE profilePS5103221.52258115IPR001471AP2/ERF domain
SMARTSM003801.6E-3258121IPR001471AP2/ERF domain
PRINTSPR003674.7E-105970IPR001471AP2/ERF domain
PRINTSPR003674.7E-108197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MERSNRISVG VLPIAKEPIL APDGPSKPPP ASGKKPAVGR SRKGCMRGKG GPENALCTYR  60
GVRQRTWGKW VAEIREPNRG ARVWLGTFNT SLEAAQAYDD AARRLYGSSA KLNLSSGDGG  120
DDFSQVPSDN YPSGGGEFVV PDNYYREEKS VFDEANCMWE TPTLLDEKRS PNWPENFSQY  180
DFMNRTKQLA DDFQVRWAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-1659114359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-1659114662ATERF1
3gcc_A4e-1659114662ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00519DAPTransfer from AT5G18450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011084760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084760.11e-146ethylene-responsive transcription factor RAP2-2-like
TrEMBLA0A4D8ZPP84e-66A0A4D8ZPP8_SALSN; Uncharacterized protein
STRINGMigut.F01818.1.p5e-52(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31552247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.12e-43ERF family protein