PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011084886.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

LBD

Protein Properties

Length: 155aa MW: 17549 Da PI: 8.2232

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011084886.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127	8.7e-40	13	111	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+l+r+C+++C +apyf +++pkkfa vhk+FGasnv+k+l+++ e++red+++slvyeAe+r+rdPvyG++g i lq+++ +l+++l XP_011084886.1 13 SCAACKFLKRRCTPNCQFAPYFRSDEPKKFAKVHKVFGASNVSKILNEVGEDQREDTVNSLVYEAEVRLRDPVYGCIGAIALLQHRMVELQHDLI 107 6*******************************************************************************************998 PP DUF260 96 llke 99 l+++ XP_011084886.1 108 LARA 111 8876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.991	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.0E-39	13	109	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MKSYQEQPRS SSSCAACKFL KRRCTPNCQF APYFRSDEPK KFAKVHKVFG ASNVSKILNE 60 VGEDQREDTV NSLVYEAEVR LRDPVYGCIG AIALLQHRMV ELQHDLILAR ARLASYVGHR 120 SLFLDDHGGS LMAPFLDIPE SNSLPSDQFG RFHFP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-43	8	116	6	114	LOB family transfactor Ramosa2.1
5ly0_B	1e-43	8	116	6	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011084886.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020551201.1	1e-113	LOB domain-containing protein 21-like
Swissprot	Q9SRL8	6e-57	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A4D9AD53	9e-73	A0A4D9AD53_SALSN; Uncharacterized protein
STRING	XP_009786680.1	6e-69	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	2e-59	LOB domain-containing protein 21

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]