PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011084888.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 252aa    MW: 27800.3 Da    PI: 7.8835
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011084888.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding569.1e-181459147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W ++Ed  l+++v+++G+++W++I++ ++ gR++k+c++rw + 
   XP_011084888.1 14 KGSWNPQEDAALIKLVEEHGPRNWSLISSAIP-GRSGKSCRLRWCNQ 59
                     799*****************************.***********985 PP
2Myb_DNA-binding53.84.4e-1768110347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+ Ed l+++a++++G++ W+tIar ++ gRt++ +k++w++ 
   XP_011084888.1  68 PFTAAEDALILQAHALHGNR-WATIARILP-GRTDNAIKNHWNST 110
                      89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.4371160IPR017930Myb domain
SuperFamilySSF466891.33E-3012107IPR009057Homeodomain-like
SMARTSM007171.3E-161362IPR001005SANT/Myb domain
PfamPF002491.3E-171459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-241567IPR009057Homeodomain-like
CDDcd001672.40E-151658No hitNo description
PROSITE profilePS5129425.95161115IPR017930Myb domain
SMARTSM007172.8E-1565113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2268114IPR009057Homeodomain-like
CDDcd001677.56E-1368111No hitNo description
PfamPF002491.6E-1468110IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MDVNGDAGCG EKIKGSWNPQ EDAALIKLVE EHGPRNWSLI SSAIPGRSGK SCRLRWCNQL  60
SPTVQHRPFT AAEDALILQA HALHGNRWAT IARILPGRTD NAIKNHWNST LRRKRNYHDV  120
DVLERRRSSD ESGSGSSESG LKRQCSRVSM EQSSYSGDEN LADGEMGLGL CGPDGLTLTL  180
LPPGRELVKS PAGKENMTQE TVEIGDTCLM TMMQRMVAQE VRNYFDKLRA QGGFRLGLDH  240
GPGFESHIHK AP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-39111141104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011084888.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084888.10.0transcription factor MYB1-like
TrEMBLA0A022RUN71e-110A0A022RUN7_ERYGU; Uncharacterized protein
STRINGMigut.F01484.1.p1e-111(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128831620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.18e-53myb domain protein 73