PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011084945.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 254aa    MW: 28876.7 Da    PI: 9.2902
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011084945.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.32.1e-092469346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +WT+eE +++  a + +  +   +W ++a++++ g++ +++++ +  
   XP_011084945.1 24 KWTKEENKKFESALAIFDEKtpnRWFKVAAMIP-GKSVYDVINQYKE 69
                     8******************9*************.*********9975 PP
2Myb_DNA-binding44.63.2e-14121165347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ +++ + +++G+g+W++I+r++   +t+ q+ s+ qky
   XP_011084945.1 121 PWTEDEHRRFLLGLQKYGKGDWRSISRHFVVSKTPTQVASHAQKY 165
                      8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.9272074IPR017884SANT domain
SMARTSM007171.8E-102173IPR001005SANT/Myb domain
SuperFamilySSF466898.22E-122377IPR009057Homeodomain-like
CDDcd001672.40E-82471No hitNo description
PfamPF002491.3E-72469IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-42468IPR009057Homeodomain-like
PROSITE profilePS5129418.974114170IPR017930Myb domain
SuperFamilySSF466892.02E-16115169IPR009057Homeodomain-like
TIGRFAMsTIGR015576.9E-19117169IPR006447Myb domain, plants
SMARTSM007172.7E-11118168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-11118165IPR009057Homeodomain-like
PfamPF002491.1E-11121165IPR001005SANT/Myb domain
CDDcd001671.32E-9121165No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MEALCPTSLV QDSSWFIGQG KSTKWTKEEN KKFESALAIF DEKTPNRWFK VAAMIPGKSV  60
YDVINQYKEL VADVSDIEAG LVPVPGYMAS PFTLELSDYR SFDVCRKKGR TCDQERKKGV  120
PWTEDEHRRF LLGLQKYGKG DWRSISRHFV VSKTPTQVAS HAQKYYLRQL SGGKDKKRPS  180
IHDITTVDLV SPSDNNRPRP LEKTNELSFQ QKLNEALTVF DSSCGDSYAA YPFNVSTQSH  240
PSSCLHIQVP RFRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A9e-1419100586RADIALIS
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105117RKKGRTCDQERKK
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011084945.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084945.10.0transcription factor DIVARICATA-like
SwissprotQ8S9H72e-86DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2G9FZV31e-114A0A2G9FZV3_9LAMI; Uncharacterized protein
STRINGXP_009776702.11e-106(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.18e-86MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]